Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00810 ATGGCTGCAccttcactctcttccgccctcaataccctctcctctctctccctccccacttcctcgcgcttctccctcctccccccgcctccccacaagctctccctcctctccaagccccttcaccacgccgccctcgtcTCCGTTCCCAAATCCAAACCCTCCGACGACATCGACACCTCCTTCTTCGACTCCGTCAACCCCAACGCCGACATTGTCTTCACCCCGCCGGAGGCTCCCGAGGGCTTCGTCCCGCCCCCCTCCTTCGACGACGGCCTCCTGGAGACCGACGAGGAGATCGCGTCCGCCTACGAGGAGCTCTACGGCCCCGCCTACAGCGGCGTGTCGGTCCTGGGCAACGACGTGTTCGTGATGGACTCGAAGGTGAAGAAGGACACTGGGTTCGGGTCTGGAGCGAAGAAGGAGAAGGTGCGCGACGGGTTTGAAGAGAGGGTGGTTCAGGTGAGGAGGGTGACCAAGGTGGTTAAGGGAGGGAAGCAGCTGCGCTTCAGGGCTGTTGTTGTTGTTGGTGACAAGAAGGGTCAGGTCGGCGTTGGAGTTGGCAAGGCCAAGGAGGTTATTGCTGCGGTTCAGAAATCTGCCGTTAATGCCAGGAGGAACATTGTTAAGGTGCCTATGACTAAGTACTCCACTTTTCCTCATAGATCTGATGGAGATTATGGAGCAGCCAAGGTGATGCTTAGACCTGCTTCTCCTGGTACTGGAGTTATTGCAGGTGGGTCTGTGAGAATTGTTCTTGAAATGGCTGGAGTTGAGAATGCTTTGGGAAAGCAAATAGGGAGTAATAATGCCCTCAACAATGCTAGAGCGACTGTTGTTGCTGTGCAGAAAATGAAGCAATTTCGTGAGGTTGCTGAGGAGCGTGGGATTCCAATGGAAGAATTATGGAAGTAA 915 0.4645 MAAPSLSSALNTLSSLSLPTSSRFSLLPPPPHKLSLLSKPLHHAALVSVPKSKPSDDIDTSFFDSVNPNADIVFTPPEAPEGFVPPPSFDDGLLETDEEIASAYEELYGPAYSGVSVLGNDVFVMDSKVKKDTGFGSGAKKEKVRDGFEERVVQVRRVTKVVKGGKQLRFRAVVVVGDKKGQVGVGVGKAKEVIAAVQKSAVNARRNIVKVPMTKYSTFPHRSDGDYGAAKVMLRPASPGTGVIAGGSVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQKMKQFREVAEERGIPMEELWK 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00810 304 ProSitePatterns Ribosomal protein S5 signature. 165 197 IPR018192 -
Cca01g00810 304 Pfam Ribosomal protein S5, N-terminal domain 148 212 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca01g00810 304 SUPERFAMILY dsRNA-binding domain-like 144 213 - -
Cca01g00810 304 Gene3D - 134 209 - -
Cca01g00810 304 Pfam Ribosomal protein S5, C-terminal domain 225 295 IPR005324 GO:0003735|GO:0005840|GO:0006412
Cca01g00810 304 Gene3D - 214 303 IPR014721 -
Cca01g00810 304 PANTHER RIBOSOMAL S SUBUNIT 50 304 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca01g00810 304 Hamap 30S ribosomal protein S5 [rpsE]. 125 301 IPR005712 GO:0003735|GO:0006412|GO:0015935
Cca01g00810 304 PANTHER 30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC 50 304 - -
Cca01g00810 304 SUPERFAMILY Ribosomal protein S5 domain 2-like 218 296 IPR020568 -
Cca01g00810 304 ProSiteProfiles S5 double stranded RNA-binding domain profile. 148 211 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca01g00810 304 TIGRFAM rpsE_bact: ribosomal protein uS5 147 301 IPR005712 GO:0003735|GO:0006412|GO:0015935
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00810 148 288 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 32.215 5.44e-16 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00810 K02988 - gmx:100787105 421.394