Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00804 ATGGAGAACAACCCTAGTTCATCAAAAAGTGATAGAAAAATGATTGAGAGGAACAGAAGAAATCAAATGAAGGCTCTTTTCTCCAAGCTCAACTCAGTTGTGCCTCATCAAAGCTCAAGGGAGGCAATTTCACGACCGGATCTGATAGATGAAGGCACAAACTACATCAAGAGCTTACAGATTAAGTTGGAGAAAATGAAGGAGAAAAGGAGCAACCTATTGGAAAGTAAGATGTCAGAAAATGCTAGCATGAGTATGGGGTTGAAGTCTCCACAATTTAAGATCCAACAAATGGGTTCAGTCTTAGAGGTTGTTCTAGTAACTGGGTTGGATTTTCAATTCATGTTCAATGAGACCATTCGTGTTCTTCAAGAAGAAGGATCAGATGTTGTTAATGCCAGTTATACGGTTATTGAAAATGAAGTTTTTCATACAATACACTGTCAGGTTGGGGAATCTGCAAATGCAACTTTGAGGATATCTGAGAAACTAAAGAAGTTTCTGTATCATTAA 513 0.3782 MENNPSSSKSDRKMIERNRRNQMKALFSKLNSVVPHQSSREAISRPDLIDEGTNYIKSLQIKLEKMKEKRSNLLESKMSENASMSMGLKSPQFKIQQMGSVLEVVLVTGLDFQFMFNETIRVLQEEGSDVVNASYTVIENEVFHTIHCQVGESANATLRISEKLKKFLYH 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00804 170 Pfam Helix-loop-helix DNA-binding domain 10 60 IPR011598 GO:0046983
Cca01g00804 170 PANTHER TRANSCRIPTION FACTOR BHLH162 1 169 - -
Cca01g00804 170 Gene3D - 1 87 IPR036638 GO:0046983
Cca01g00804 170 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
Cca01g00804 170 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 169 IPR015660 GO:0003700|GO:0006357
Cca01g00804 170 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 76 IPR036638 GO:0046983
Cca01g00804 170 Coils Coil 49 76 - -
Cca01g00804 170 SMART finulus 13 65 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00804 Cca-Chr1 10694247 10695188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00804 3 168 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.556 8.20e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca01g00804 HLH 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00804 - - gmx:100810793 273.478