Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00803 ATGGAATGCCTCCGCAAACTTTCGCACACGCTCATCTCCACTGGAAGCACAATACCTTTAGggcggcagcggcggcggcggTGCTTCACCTTCTGCCTTCCCCTCATCTCGAATCTGCTAAACCCTACCATCGAGGTTTCATGTTGGATTCTTACTGGAGAATGGCAGACTGCGGTCATCAGATCAAAATATGTCCAAGTATTACTTAACCAAGATATGAGTTTTTTTGACACTTACGGAAATAATGGAGATATTGTGAGTCAAGTATTGAGTGATGTGCTGCTCATTCAATCTGCTCTCAGTGAAAAGggttggtga 318 0.3868 MECLRKLSHTLISTGSTIPLGRQRRRRCFTFCLPLISNLLNPTIEVSCWILTGEWQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKGW 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00803 105 Gene3D ABC transporter type 1, transmembrane domain 13 104 IPR036640 GO:0005524|GO:0016021
Cca01g00803 105 SUPERFAMILY ABC transporter transmembrane region 43 101 IPR036640 GO:0005524|GO:0016021
Cca01g00803 105 Pfam ABC transporter transmembrane region 39 103 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca01g00803 105 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 44 105 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca01g00803 105 PANTHER ABC TRANSPORTER B FAMILY MEMBER 20-RELATED 42 103 - -
Cca01g00803 105 PANTHER ABC TRANSPORTER B FAMILY 42 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00803 Cca-Chr1 10683962 10686785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00803 45 103 Calmodulin-binding Proteins AT2G36910 45.763 2.23e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00803 K05658 - ccaj:109791322 128.257