Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00799 ATGTTGAGTCCGAGGCCCAACATAAACTGGATAGTGCACTCTTGTATGCCCTTTGGGCTTCTGTTTCTCGTTTTTGAGCCATTTGCCTTACGTGTAATGACCGAAATCAACAGAACTTCAAAAAATAGCAAGAGGACACGTGGCCAACGTTGCTGTCATCGCTGGAACGATGTGGTCCCCACACAGAGGCCACGCGTTTCGCGGATTTCTGCTTCTCAAGTGCGTGTCACGTGGCCCACACTTTCCTTTGTCGATAACCTCACTCCCAAACCGGCTGTCTCCGGTTACCCTCCCCCGCCACCGGAAAACCCGGTTTCCCGCTCCACGTGTCCGCGCGGACCCCACAGGCAGAATCTGAGGACCCAAAATCTAGGGTTTTCTGTTCTTCCTTGGGGATCTGAAGGCATGCAGTCCAAGTCTGAAACTGCAAATAGACTGAGGTCAGATCCTCATACCTTTCAGTCTGGTGGTGTTTATTCTGAGCCTTGGTGGCGTGGTATTGGGTACAATCCCTTGGCCCAAACAATGGCTGGGGCAAATGCGTCCAATTCGTCGTCTCTTGAATGTCCTAATGGTGATTCAGAATCCAATGAAGAAGGCCAGTCATTGTCCAATAGTGGAATGAATGAGGAAGATGATGATGCCACTAAGGATTCACAGCCTGCTGCTCCTAATGAACCAGGAAATTATGGGCAAGAACAGCAAGGGATGCAGCACACAGCATCATCTGCACCTTCCATGCGCGAAGAATGCCTTACACAGGCGCCACAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAGGATCCGTATTATGGGGGCATGATGGCAGCTTATGGTCACCAACAGATGGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCGCTTGAGATGGCTCAAGAGCCTGTGTATGTTAATGCCAAACAGTACCAAGGAATTCTGAGGAGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAAGAAGCTAATAAAATCTAGAAAGCTATGTTGCCTTTAA 1047 0.489 MLSPRPNINWIVHSCMPFGLLFLVFEPFALRVMTEINRTSKNSKRTRGQRCCHRWNDVVPTQRPRVSRISASQVRVTWPTLSFVDNLTPKPAVSGYPPPPPENPVSRSTCPRGPHRQNLRTQNLGFSVLPWGSEGMQSKSETANRLRSDPHTFQSGGVYSEPWWRGIGYNPLAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDATKDSQPAAPNEPGNYGQEQQGMQHTASSAPSMREECLTQAPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQMGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKSRKLCCL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00799 348 ProSiteProfiles NF-YA/HAP2 family profile. 309 348 IPR001289 GO:0003700|GO:0006355
Cca01g00799 348 MobiDBLite consensus disorder prediction 89 160 - -
Cca01g00799 348 SMART cbf3 308 347 IPR001289 GO:0003700|GO:0006355
Cca01g00799 348 MobiDBLite consensus disorder prediction 181 251 - -
Cca01g00799 348 MobiDBLite consensus disorder prediction 181 209 - -
Cca01g00799 348 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 165 344 IPR001289 GO:0003700|GO:0006355
Cca01g00799 348 MobiDBLite consensus disorder prediction 222 250 - -
Cca01g00799 348 MobiDBLite consensus disorder prediction 110 155 - -
Cca01g00799 348 MobiDBLite consensus disorder prediction 92 107 - -
Cca01g00799 348 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 165 344 - -
Cca01g00799 348 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 311 344 IPR001289 GO:0003700|GO:0006355
Cca01g00799 348 ProSitePatterns NF-YA/HAP2 subunit signature. 314 334 IPR018362 GO:0003677|GO:0016602
Cca01g00799 348 Gene3D - 309 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00799 Cca-Chr1 10570289 10575737 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00799 136 344 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.659 5.31e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Cca01g00799 CBFB_NFYA 7.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00799 K08064 - gmx:100808378 416.387