Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00789 ATGCACAGTCAACAAACAGAGAAAGAAGAAGACGACGAAGGCCCACCTCCGGGATGGCAACCTATTCCCACTCATcctccgccgccgccaccgccaccgccacgtccatccgGTTGGGCTCAAATGGTTTGCGGTTCTTGCCGTCGACTGCTTTCGTATCCACGAGGTGCCAAACATGTCAAATGTTCATGTTGTCAGACTGTCAACATTGTATTAGAAGGTGATCAGGTTGGGCAAGTTAAGTGTGGCAGTTGTGCAGTATTGCTAATGTACCCATATGGTGCTTCGCAAGTTAGATGTTCCTCATGCCGGTTTGTGACAGAAATTGGGGCACACAACAAGCGGCCTCCATGGTCTGTACAACAAAGGAAACCAACTCCAACCAAAACTGGTTGTTAG 399 0.4286 MHSQQTEKEEDDEGPPPGWQPIPTHPPPPPPPPPRPSGWAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEGDQVGQVKCGSCAVLLMYPYGASQVRCSSCRFVTEIGAHNKRPPWSVQQRKPTPTKTGC 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00789 132 MobiDBLite consensus disorder prediction 16 38 - -
Cca01g00789 132 MobiDBLite consensus disorder prediction 1 15 - -
Cca01g00789 132 PANTHER PROTEIN LSD1 26 128 IPR040319 -
Cca01g00789 132 PANTHER PROTEIN LOL2 26 128 - -
Cca01g00789 132 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 41 71 IPR005735 -
Cca01g00789 132 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 79 107 IPR005735 -
Cca01g00789 132 MobiDBLite consensus disorder prediction 1 38 - -
Cca01g00789 132 Pfam LSD1 zinc finger 82 106 IPR005735 -
Cca01g00789 132 Pfam LSD1 zinc finger 44 68 IPR005735 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Cca01g00789 zf-LSD1 3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00789 - - gmx:100780865 224.942