Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00787 ATGGCCATGGAGCACTGCGTTTCCGCGGGATGGAAACCCACCCAAAGCCCCATGACAGTTACAGAAAATGTTGATGGGTGTTTTGATTGCAACATCTGCTTAGATTTTGCACATGAGCCAGTTGTCACACTGTGTGGTCACCTATACTGCTGGCCCTGCATCTACCAGTGGCTCCATGTCCAAAGTGCTTCTCTTGCACCTGATGAACACCCACAATGCCCTGTTTGCAAGGATGACATATCTCACACCACAATGGTTCCTCTCTATGGCCGAGGCCAGGCCATAGCTCACAGTGACCGTGATGGGAAGGCATCATCCTACAGAGGCATTTTTATCCCACCAAGGCCACCTGCTTTGAGTGCTCAATCTCTTGCGGCAACATCATCTCAAAGTGGTCAACAGCTTCCATATCGCAATCCTTATCAGAGTCAGCATTTCAACCCTCCTTTGTACCAAGAAGAGGATGATGACACATCATCATCACAAATTCTGAATCCTGGTGGCACCAGGGCACCTGGATTCCCCCACCTTGTGGTGGGGATGTTTGGAGACATGTTTTATACCAGAGTCTTTGGCAACTCAGAAAATTTATACACCTACCCAAATTCTTATCATCTGGTGGGAAGTAATAGCCCTAGGTTGAGAAGGCAAGAGATGCAGGCAGACAAATCATTGAACCGGATTTCAATTTTTCTCTTTTGTTGCTTCCTTCTGTGTCTTATAGTCTTCTGA 732 0.4713 MAMEHCVSAGWKPTQSPMTVTENVDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYQWLHVQSASLAPDEHPQCPVCKDDISHTTMVPLYGRGQAIAHSDRDGKASSYRGIFIPPRPPALSAQSLAATSSQSGQQLPYRNPYQSQHFNPPLYQEEDDDTSSSQILNPGGTRAPGFPHLVVGMFGDMFYTRVFGNSENLYTYPNSYHLVGSNSPRLRRQEMQADKSLNRISIFLFCCFLLCLIVF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00787 243 SUPERFAMILY RING/U-box 22 90 - -
Cca01g00787 243 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 243 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cca01g00787 243 MobiDBLite consensus disorder prediction 146 167 - -
Cca01g00787 243 CDD RING-HC_AtRMA_like 28 77 - -
Cca01g00787 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 101 IPR013083 -
Cca01g00787 243 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Cca01g00787 243 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 243 - -
Cca01g00787 243 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Cca01g00787 243 MobiDBLite consensus disorder prediction 146 169 - -
Cca01g00787 243 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Cca01g00787 243 SMART ring_2 30 76 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00787 Cca-Chr1 10446045 10447909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00787 9 229 C3H Transcription Factor Family AT4G27470 40.351 1.06e-46 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00787 K10666 - gmx:100779793 389.423