Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00786 ATGGCGATGATCGTCACCAACACGCCCTCGCAGGACCTCGCCCTCACCAACCTCGCCTTCTGTTCCCCCTCCGATCTTAGCAAATTCGCCGTCGGCAACAACCTCTACCTCGCTTCCGTCGCCGACTTCGTcttctctctttcTGGTCATGAGAGCATTCGCAGCGGCCATATTGCGTTGAATTCCATTCAGCGTCGGTGTGCCAAAGTTTCTGCTGCCGAATCTGTATCTGTGAGACGATTTGAGCCACCTGACAACTTCAACCTAGCACTGCTAACCCTTGAACTGGACTTTATTAAAAGGGGGGGTAAGAGTGAACAGATTGATGCTGTTATACTGGCTAAGCAACTTCGGAAGAGATTCAGGAACCAGGTTATGACTGTGGGGCAGAAAGTGTTATTTGAGTATCATGGAAACAATTATAACTTTACTGTCAGTCAAGCTGCTGTTGAGGGCCAAGAAAAGTCTAATTCTCTTGAAAGAGGAATGGTTTCAGATGACACATACATTGTTTTTGAAACATCACGGGATAGTGGAATTAAGATTGTCAATCAACGTGAGGCTGCCACTAGCAACATTTTCAAGCAGAAAGAATTTAACCTTCAGAAGCTTGGTATTGGTGGCTTGAGTGCAGAGTTTGCTGATATATTTCGAAGAGCTTTTGCCTCTCGTGTTTTCCCTGCCCATGTGACATCTAAATTAGGAATCCAGCATGTGAAGGGCATGCTTCTTTATGGACCTCCTGGAACTGGAAAGACACTTATAGCACGTCAAATTGGAAAAATTTTGAATGGGAAGGAACCAAAGATTGTAAATGGCCCTGAAGTTTTGAGCAAATTTGTTGGTGAGACTGAGAAGAACGTGAGAGACCTTTTTGCTGATGCTGAACAGGATCAGAGGACCCTAGGGGATGAAAGTGATTTGCATGTTATAATCTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGTTCAACTCGAGATGGTACTGGAGTTCATGATAGCATTGTAAATCAGCTTCTTACTAAGATAGATGGTGTGGAGTCACTAAATAATGTTTTGCTTATTGGAATGACTAACAGAAAGGACATGCTTGATGAAGCTCTCTTAAGACCAGGGAGGTTGGAAGTCCAGGTTGAGATAAGCCTTCCTGATGAAAGTGGTCGATTGCAAATTCTTCAAATTCATACTAACAAAATGAAAGAGAATTCTTTTCTTGCTCCTGATGTGAACCTTCAAGAGCTTGCTGCTCGAACAAAAAACTACAGTGGTGCAGAACTTGAAGGAGTTGTGAAAAGTGCTGTCTCATATGCTTTAAATAGACAATTGAGTCTAGATGATCTCTCTAAGCCAGTTGAGGAAGAGAATATTAAGGTTACAATGGATGACTTTTTGAATGCACTCCATGAAGTTATTCCCGCATTTGGAGCTTCAACTGATGATCTTGAAAGATGCAGACTCCATGGCATGGTGGAGTGTGGTGATCGACATAAGCACATTTATCAAAGAGCAATGCTACTTGTGGAGCAAGTTAAAGTTAGTAAAGGAAGCCCACTTGTCACTTGTCTCCTGGAAGGTTCCAGTGGCAGTGGTAAAACTGCACTTGCAGCTACTGTTGGTATTGACAGCGACTTCCCATATGTCAAGATAGTTTCAGCTGAAACAATGATTGGTCTACATGAGAGCACCAAGTGTTCACAGATTATTAAGGTTTTTGAGGATGCATACAAGTCACCACTGAGTGTCATCATTCTTGATGACATTGAGAGATTATTGGAGTATGTGGCCATTGGTCCTCGTTTTTCAAACTTGATTTCTCAGACACTACTGGTTCTTCTCAAAAGGCTTCCTCCAAAGGGGAGAAAACTCATGGTTATTGGCACGACAAGCGAACTGGGTTTCTTGGACTCAATTGGATTTTGTGATCCTTTCCCCGTTACGTACCATGTTCCTACCTTGAACACAAAGGATGCAAAGAAGGTTCTAGAGCAGTTGAACGTGTTTTCTGATGAAGATATTGATTCTGCTGCAGAGGCATTGAATGATATGCCTATCAGGAAGCTATACATGTTGATAGAAATGGCAGCGCAAGGGGAGCATGGTGGATCTGCAGAAGCCATCTATTCTGGCAAAGAGAAGATTAATATCTCTCATTTCTATGATTGCCTCCAGGATGTTGTTAGATTATAA 2190 0.4224 MAMIVTNTPSQDLALTNLAFCSPSDLSKFAVGNNLYLASVADFVFSLSGHESIRSGHIALNSIQRRCAKVSAAESVSVRRFEPPDNFNLALLTLELDFIKRGGKSEQIDAVILAKQLRKRFRNQVMTVGQKVLFEYHGNNYNFTVSQAAVEGQEKSNSLERGMVSDDTYIVFETSRDSGIKIVNQREAATSNIFKQKEFNLQKLGIGGLSAEFADIFRRAFASRVFPAHVTSKLGIQHVKGMLLYGPPGTGKTLIARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTLGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDESGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLDDLSKPVEEENIKVTMDDFLNALHEVIPAFGASTDDLERCRLHGMVECGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGSSGSGKTALAATVGIDSDFPYVKIVSAETMIGLHESTKCSQIIKVFEDAYKSPLSVIILDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKGRKLMVIGTTSELGFLDSIGFCDPFPVTYHVPTLNTKDAKKVLEQLNVFSDEDIDSAAEALNDMPIRKLYMLIEMAAQGEHGGSAEAIYSGKEKINISHFYDCLQDVVRL 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00786 729 Pfam Cell division protein 48 (CDC48), domain 2 107 161 IPR004201 -
Cca01g00786 729 Gene3D - 1 81 - -
Cca01g00786 729 PANTHER BNAA03G50350D PROTEIN 1 32 - -
Cca01g00786 729 PANTHER BNAA03G50350D PROTEIN 46 729 - -
Cca01g00786 729 Pfam AAA+ lid domain 409 464 IPR041569 -
Cca01g00786 729 Pfam ATPase family associated with various cellular activities (AAA) 242 382 IPR003959 GO:0005524|GO:0016887
Cca01g00786 729 Pfam ATPase family associated with various cellular activities (AAA) 523 635 IPR003959 GO:0005524|GO:0016887
Cca01g00786 729 Gene3D - 192 383 IPR027417 -
Cca01g00786 729 CDD AAA 240 383 - -
Cca01g00786 729 Gene3D - 480 651 IPR027417 -
Cca01g00786 729 CDD AAA 512 630 - -
Cca01g00786 729 Gene3D - 84 182 - -
Cca01g00786 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 481 IPR027417 -
Cca01g00786 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 699 IPR027417 -
Cca01g00786 729 Gene3D - 384 471 - -
Cca01g00786 729 PANTHER VESICULAR-FUSION PROTEIN NSF 46 729 IPR039812 GO:0016887|GO:0035494
Cca01g00786 729 PANTHER VESICULAR-FUSION PROTEIN NSF 1 32 IPR039812 GO:0016887|GO:0035494
Cca01g00786 729 ProSitePatterns AAA-protein family signature. 353 371 IPR003960 GO:0005524|GO:0016887
Cca01g00786 729 SUPERFAMILY Cdc48 domain 2-like 84 187 IPR029067 -
Cca01g00786 729 SUPERFAMILY ADC-like 1 85 IPR009010 -
Cca01g00786 729 SMART AAA_5 518 651 IPR003593 -
Cca01g00786 729 SMART AAA_5 238 385 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00786 Cca-Chr1 10413596 10430899 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00786 206 457 Calmodulin-binding Proteins AT3G56690 33.071 3.32e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00786 K06027 - gmx:100779259 1291.56