Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00785 ATGGATGATCATACTAATGTGTTGGAGCTCAACCTTGGTTTAGGAAGCAACCTTGGTGGTCTTCATGTAGGGCAATCACCGAGGCAAAGGTGCCCTGCACCTTTTCTGTTGAAGACTTACGATTTGTTGGAAGAAGGAGAGGCTGAAAATAGCACCAAAATTGTGTCGTGGAATGCTGAAGGAACTGCTTTTGTTGTGTGGTCTCCAGCTGAGTTCTCTGAGCTTACCTTGCCTAGATATTTCAAGCACAACAACTTCTCTAGCTTCATTCGCCAGTTGAATACATATGGATTCAAGAAAACATCATCAAAAATATGGGAATTCAAGCACGAGAAATTTAAGAGGGGTTGCAGGCAGATGCTAGGAGAAATAACAAGGAAAAAGTGCGAGCCAAGTGTGTTTCCTGCATACCTCAAGTCTTGTTCTGAGGAAAATGCAACGAGTTCGACGGAAGATAAGAATGAACAACAACTGATGGAGGAGAACAAGAACCTAAAGAAGGAGAGATTAGAGCTGCAAATGCAGATAGATGAATGCAAAGCACTTGAAATCAAACGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGATCTTGTTTCTTGTGGAGTATGCGAATTGGTTTTATGAAGATAATTCTGTAGAAAATAATTCATCTCTGAAGTCATTAAATCTGAAAGAGTTCACATCTTTACTGTTCAATAGTTGTGATGTTTTGAAGCCTTACGTGGCTCATATAGATGATATTTTCAAGGACTTCACATCCTATAAGGTTCGAGTTCCTGTAACTGGAGCAATAATTCTTGATGAAACATATGAAAGGGTGCCGAACAGGTTTAGGTTGCCGAGGCTGCCGAACGAGTTTAGGCTACCGAAGGTTCCGAACGAGTTCAGGCTGTCGAGGGTGCCGAAGGGGTTCATGCTACCGAGGGTGCTGAATAGGTTGAGGGTGCCGAGGGTGCCGAACGGGTTCAGGCTACCGAAGGTGCCGAACAGGTTCAGGCTGCCGAATGAGTCTTTCAACGATAACCGAACAGCGAACTGA 1056 0.4337 MDDHTNVLELNLGLGSNLGGLHVGQSPRQRCPAPFLLKTYDLLEEGEAENSTKIVSWNAEGTAFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKTSSKIWEFKHEKFKRGCRQMLGEITRKKCEPSVFPAYLKSCSEENATSSTEDKNEQQLMEENKNLKKERLELQMQIDECKALEIKRFVLNVPKEDLQSFERILFLVEYANWFYEDNSVENNSSLKSLNLKEFTSLLFNSCDVLKPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERVPNRFRLPRLPNEFRLPKVPNEFRLSRVPKGFMLPRVLNRLRVPRVPNGFRLPKVPNRFRLPNESFNDNRTAN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00785 351 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 24 186 IPR027725 -
Cca01g00785 351 Pfam Dcp2, box A domain 185 260 IPR007722 GO:0003723
Cca01g00785 351 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A-LIKE 24 186 - -
Cca01g00785 351 SMART hsfneu3 31 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca01g00785 351 SMART DCP2_2 179 261 IPR007722 GO:0003723
Cca01g00785 351 Gene3D - 27 128 IPR036388 -
Cca01g00785 351 SUPERFAMILY Dcp2 domain-like 185 261 IPR036189 GO:0003723|GO:0016787|GO:0030145
Cca01g00785 351 Coils Coil 148 185 - -
Cca01g00785 351 Gene3D Dcp2, box A domain 179 275 IPR036189 GO:0003723|GO:0016787|GO:0030145
Cca01g00785 351 PRINTS Heat shock factor (HSF) domain signature 35 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca01g00785 351 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca01g00785 351 PRINTS Heat shock factor (HSF) domain signature 89 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca01g00785 351 Pfam HSF-type DNA-binding 35 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca01g00785 351 SUPERFAMILY "Winged helix" DNA-binding domain 32 127 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00785 Cca-Chr1 10390403 10408406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00785 18 182 HSF AT5G62020 35.025 1.06e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca01g00785 HSF_DNA-bind 2.1e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00785 K09419 - gmx:100789792 294.278