Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00784 ATGGTGGATATTGAAGAAAGATTAGATGATTCTTTTTGCTTTCGTGTGAGATGCGAAGAACCCTTGAAGGTAAAACCGAGAGATATCTTGACATTCAATGTGAATGTTAGTGTTCGACCCTACACACGTGATTTCTCTCGTCTAAGGCCAGTAATGTTGTTATTCGAAAGCTCAGTACCTATAACATGTGAAAGTTTTGTAGAAAATAATGATCATGCTTTTCTACGAAGTGCTTTATGGCCCCATCCTGGCTACATCCCACGAAGCCTGGACCAATTAGGACGAAGGATTGTTTTACGGATTCAACAAGAGTTGGAGGTTCAGACCAACACTTCTGCGGATTCCACGTCTCGACAATTTTCTTTAGCATTAGACATTTTCATAGACACTAGGCAACATTCTGAGAGCGATGATGAAGAGGATGGAATGATAGAAGAGTCGATGCAACAAGATGTGAGGATGGTTCCGGCCTCCAAAGAAGCCATTGAGTCATTGAAAGCATTCACAGACTCATCGTTCTTGAAAACAGAAAAGTGTAATATTTGCATGGAAAGGTTTCAAGATGACGTGAATTCCTTATCTTGCTTGTCAATGCCATGCAATCATGTGTTTCATAGTGACTGTATTGTTAAGTGGCTCCAAACCAGTCACATGTGTCCTTTGTGTCGTTATCCTATGCCTATTGCAAAGGATTAA 696 0.4052 MVDIEERLDDSFCFRVRCEEPLKVKPRDILTFNVNVSVRPYTRDFSRLRPVMLLFESSVPITCESFVENNDHAFLRSALWPHPGYIPRSLDQLGRRIVLRIQQELEVQTNTSADSTSRQFSLALDIFIDTRQHSESDDEEDGMIEESMQQDVRMVPASKEAIESLKAFTDSSFLKTEKCNICMERFQDDVNSLSCLSMPCNHVFHSDCIVKWLQTSHMCPLCRYPMPIAKD 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00784 231 ProSiteProfiles Zinc finger RING-type profile. 179 223 IPR001841 -
Cca01g00784 231 PANTHER F6A14.12 PROTEIN-RELATED 110 227 - -
Cca01g00784 231 SMART ring_2 179 222 IPR001841 -
Cca01g00784 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 229 IPR013083 -
Cca01g00784 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 110 227 - -
Cca01g00784 231 SUPERFAMILY RING/U-box 178 228 - -
Cca01g00784 231 Pfam Ring finger domain 178 223 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00784 Cca-Chr1 10383873 10384568 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00784 150 227 C3H Transcription Factor Family AT1G18760 34.177 5.74e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00784 - - ccaj:109801196 295.434