Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00783 ATGTTTGATATCACAGAAAGATCAGATTGTTACTGTTTTCGTGTGAGAACAGAAGAACCCTTGAAGCCAAAATGGAGAGATATCTTGAAATTCAATGTGAATGTTACTAATCAACGCTACACATATTATTCCTCTCCTAGTCGACGACTTATGGGGCCAACAATCTTATTCGGGAACTTGGTACCTATAACTTGCGAAGGTTTCATAGAACACAATCATGGTTTTCTACGAAGTGTTTTATGGCCCTCTCCTGACGACATCCCAGAATGCTTGGACCAATTAGCAAGAAGGATTGCTTTTCGGGTTCGAGAACACTTGAAGGTTCAGACTAACACTTGTGCTGATGATTCAGAGTGTAGAGAATTTCATTTGGATTTAGATATTTTCATAGTCTCGGTGCAACatgatgatgaagccattgagagcgatgatgaagatgatgatgaagaggatgaagaggatgCAGTGATAGAAGAGTCGATGCAACAAGGTGTGAGGATGGTTCCAGCCTCCAAAGAAGCCATTGAGTCATTGAAAGCATTCACAGTCGACTCATCGTTCTTGAAAATAGAAAAATGTAATATTTGCATGGACAAGTTTCAAGATGAATATGGGAATTCTTTGTCTTTGTTGTCAATGCCATGCAATCATGTGTTTCATGGTCACTGTATTGTCAAGTGGCTGCAAACCAGTCACATGTGTCCTTTGTGCCGTTATCCTATGCCCATTGCAAAGGACGACTAA 744 0.3696 MFDITERSDCYCFRVRTEEPLKPKWRDILKFNVNVTNQRYTYYSSPSRRLMGPTILFGNLVPITCEGFIEHNHGFLRSVLWPSPDDIPECLDQLARRIAFRVREHLKVQTNTCADDSECREFHLDLDIFIVSVQHDDEAIESDDEDDDEEDEEDAVIEESMQQGVRMVPASKEAIESLKAFTVDSSFLKIEKCNICMDKFQDEYGNSLSLLSMPCNHVFHGHCIVKWLQTSHMCPLCRYPMPIAKDD 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00783 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 244 IPR013083 -
Cca01g00783 247 PANTHER F6A14.12 PROTEIN-RELATED 108 242 - -
Cca01g00783 247 SUPERFAMILY RING/U-box 192 244 - -
Cca01g00783 247 ProSiteProfiles Zinc finger RING-type profile. 193 238 IPR001841 -
Cca01g00783 247 SMART ring_2 193 237 IPR001841 -
Cca01g00783 247 Pfam Ring finger domain 192 238 IPR001841 -
Cca01g00783 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 108 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00783 Cca-Chr1 10381230 10381973 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00783 147 242 C3H Transcription Factor Family AT1G18760 32.292 1.55e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00783 - - ccaj:109801196 486.108