Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00779 ATGCAGCAGCTCGCCGACAACGACCCCAACCGCTATGGCACGCCGCCTGCCGCCAAGGACGCCGTCGAGAACCTCTCCACCGTCACCGTCGACGATGACATGCTGAACTCGGAGCTGAACCAGTGCGCGGTTTTCCAGGACGAGTTCGAGAAGGGGTCGCATGTGACGCAAATGCCCTGCAAGCACGTGTACCACGGTGACTGCTTGATTCCCTGGCTTCGCCTGCACAACTCTTGCCCCGTGTGCCGATACGAATTGCCCACGGATGACGCTGATTATAAGAATCGGACACAGGGGAACGTCGGTGATGGGTCGAGGTCCAATGGGAGAGATAGTGGTGGCAGCGGCAATGGCGGTGCAGGTGCAAGGGGGAGTAACAGGCCTGTTCACAGGACTTTTAGAATATATCTGGGGAATCCTTTTGATACAGGTGGATCTGCGCACGACAGCGGTGAAAGGAGATGGAGGAATTTTCCAGAAGATATGGATTGA 492 0.565 MQQLADNDPNRYGTPPAAKDAVENLSTVTVDDDMLNSELNQCAVFQDEFEKGSHVTQMPCKHVYHGDCLIPWLRLHNSCPVCRYELPTDDADYKNRTQGNVGDGSRSNGRDSGGSGNGGAGARGSNRPVHRTFRIYLGNPFDTGGSAHDSGERRWRNFPEDMD 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00779 163 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 143 - -
Cca01g00779 163 PANTHER OS06G0101300 PROTEIN 1 143 - -
Cca01g00779 163 SUPERFAMILY RING/U-box 23 90 - -
Cca01g00779 163 ProSiteProfiles Zinc finger RING-type profile. 42 83 IPR001841 -
Cca01g00779 163 MobiDBLite consensus disorder prediction 90 163 - -
Cca01g00779 163 Pfam Ring finger domain 40 83 IPR001841 -
Cca01g00779 163 MobiDBLite consensus disorder prediction 147 163 - -
Cca01g00779 163 MobiDBLite consensus disorder prediction 93 114 - -
Cca01g00779 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 89 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00779 Cca-Chr1 10357660 10358151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00779 3 96 C3H Transcription Factor Family AT5G15820 46.809 6.87e-27 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00779 K11982 - gmx:100785289 230.72