Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00777 ATGAGCGATTCTGCATACAGAGTGGAAACCACACCACGCCTTGCTCAATGGAGAATCGAAAACTTGGCTTCTTGCACTTATCGAAAATCCGATCCTTTCAAGATCGGAAAGTGGAATTGGCATTTATCGGTGGAGAAGAACAGGGTTTTGTTTGTTAAATTGTTCCCAGAAATATCCAACCTAACTAGAGAAAATCCCCCTATTGCATCTTTCATCGTTCGGGTGGTTAGTTCTGTTGGAGATCGCAAGGCCCTCACACATCCAGAAATAAAGGACAAGGTGCTAAAGAATAACGAGGACTTTGTTTGGGCAATTGAGGTTCCACTAACTGGGAAATTCATTATTGACGTTGAGTTTCTTGATTTGAAGACTGCATCCCCAAACGGTGGAGAACCTTGTTCCATTTGGGCTGAAGGATTCACACAGCAAAGATCAAATGCAAAAGCTATAGAGTCTCTTGGTAGAATGCTAACAGAAGGCATCCACGCAGACATCACAATCAATGCTTCTGATGGAAGCATAGGAGCTCATAGAGCTGTTCTTGCTGCCAGATCACCCGTCTTCCGCAGCATGTTCTCACACAATCTTCAGGAGAAAGAGTTGTCCACCATAAACATCTCAGACATGTCAATTGAAGCATGCCAAGCTTTTCTCAATTATCTCTATGGCATCATCAAGCATGAAGAGTTTCTGACTCATAGGTTGGCCCTTCTGCATGCAGCAGACAAGTATGATATATCTGACTTGAGAGATGCATGCCATGATAGCCTTCTAGAGGATATTGACACAAAAAATGTACTTGAGAGGCTCCAAAAGGCATCACTGTATCAGTTGATGAAACTGAAGATGAGTTGCATCAGATATCTTGTGAAGTTTGGTAAAATATATGAAATTAGGGATGATTTCAATACCTTCCTGCAAAATGCAGACAGGGATCTGATTGCTGAAGTCTTCCATGAAGTTCTTGATGCTTGGAAAGGATTTTGA 987 0.4195 MSDSAYRVETTPRLAQWRIENLASCTYRKSDPFKIGKWNWHLSVEKNRVLFVKLFPEISNLTRENPPIASFIVRVVSSVGDRKALTHPEIKDKVLKNNEDFVWAIEVPLTGKFIIDVEFLDLKTASPNGGEPCSIWAEGFTQQRSNAKAIESLGRMLTEGIHADITINASDGSIGAHRAVLAARSPVFRSMFSHNLQEKELSTINISDMSIEACQAFLNYLYGIIKHEEFLTHRLALLHAADKYDISDLRDACHDSLLEDIDTKNVLERLQKASLYQLMKLKMSCIRYLVKFGKIYEIRDDFNTFLQNADRDLIAEVFHEVLDAWKGF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00777 328 Gene3D Potassium Channel Kv1.1; Chain A 140 291 IPR011333 -
Cca01g00777 328 PANTHER OS08G0495500 PROTEIN-RELATED 1 328 IPR044714 -
Cca01g00777 328 ProSiteProfiles BTB domain profile. 163 222 IPR000210 GO:0005515
Cca01g00777 328 SUPERFAMILY POZ domain 149 259 IPR011333 -
Cca01g00777 328 SMART BTB_4 163 261 IPR000210 GO:0005515
Cca01g00777 328 CDD BTB_POZ_ZBTB_KLHL-like 162 244 - -
Cca01g00777 328 Pfam BTB/POZ domain 156 259 IPR000210 GO:0005515
Cca01g00777 328 PANTHER OS08G0495500 PROTEIN 1 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00777 Cca-Chr1 10308869 10311308 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca01g00777 BTB 1.7e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00777 K10523 - gmx:100790186 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00777 01 10308869 10311308 Cca05g01240 05 29975227 29980193 PCT