Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00776 ATGGGTTTCTCTTTTCTCCACCTCATCTCATTCTTGCTTCTTTGCTCTTTCTTGCAACAATCCTCCCATGCCATCAAAAGGTCTTATATTGTATACTTAGGATCACATTCTCATGGCCCAAACCCTTCAGCAAGTGATCTTGAGTCTGCAACAAATTCTCATTACAAATTATTAGCCTCACACTTGAGGAGTAAACACATCAATGGTTTTGCTGCTGTACTTGAAGAAGAAGAAGCACTAGAGTTAGCAAAGAATCCCAATGTTGTGTCTGTGTTTCAGAACAAAGGGCACAAATTGCAAACCACTAGATCATGGGAATTTCTTGGTCTAGGGAGTGATGGAGTAGTTTCCAAAGACTCCATATGGGAGAAGGCAAGATATGGTGAGGGAGTAATCATTGGTAACATTGATACAGCTGCTATGACTAACAGAGGGAAAATTCCCCCTTTTACCACTGTTTTTGTTGTGAGGCTGAACCTATTTTTTTTTTTTTGGGGGGATTTCAGCTTTTGGAACAGTTGTAGAATGGAGTCAAATCAGGCATCTTCTACCATGGAAGTTGAGACTGTCCCATCTGAGGCCAAACCTTTGCCACCAAAGCCGAAGTTTGAGCCTTTGAAGCCTCATGAAATGTCTGATGGTCAGATTCAGTTCCGCAAGGTGAATGTTCCACCTCATCGATATACCCCTCTTAAGAAAGCTTGGATGGATATCTATACTCCAATATATGAACAGATGAAAATCGATGTCCGCATGAATTTGAAGGCTCGTAGGGTTGAGCTGAAGACAAGACATGATACACCTGATATCAGTAACCTGCAGAAATGTGCTGATTTTGTCCATGCTTTCATGCTGGGTTTTGATGTCATTGATGCCATTGCTCTTCTGCGTTTGGATGAGCTTTACATCGAGTCCTTTGAGATCAAGGATGTTAAAACACTTCGAGGTGATCACTTGTCTCGTGCTATTGGAAGGTTATCTGGTAAAGGTGGTAAAACAAAGTTTGCTATTGAGAATGCGTCAAAGACAAGAATTGTGATTGCTGACACCAAAATTCACATATTGGGTTCTTTTGCTAACATAAAGATTGCCAGGGATTCTCTTTGTAGCCTGATCCTGGGATCACCAGCAGGAAAGGTATATTCAAAACTAAGAGCAGTTACTGCCAGATTGGCAGAAAGGCACAAAGTGTACTTTGTTCTCATGGCCTTGGAGTTAACTTGTATTGGAATAAAATATGGAGTCTCAGACCATAATCCCTTTCAACAAATAAGTCCAACCATGTTGCTTTTCATCCTTGCTTTATTCTCCCATGTCCTTGCACTCACTGCTGACATGAGCATGCCAACTAACATCATAACATTCCACGTGTCAGGAGTAGTTGGATGTGAAGCACTTCTTTGGATTCTCCTTGCTCAGTTCTTGTGGTACTATATCATCAACCTACTTCTTTTACTTCTAGCATCCTTCTGCTTCTTCAACTACATTGTTCATATCACTCACCTTCTACGTAGAACAATCTCAAATGATGTTCAGATGTCAAATATGGAACCTCGTGAAGCTCAAGTA 1569 0.4092 MGFSFLHLISFLLLCSFLQQSSHAIKRSYIVYLGSHSHGPNPSASDLESATNSHYKLLASHLRSKHINGFAAVLEEEEALELAKNPNVVSVFQNKGHKLQTTRSWEFLGLGSDGVVSKDSIWEKARYGEGVIIGNIDTAAMTNRGKIPPFTTVFVVRLNLFFFFWGDFSFWNSCRMESNQASSTMEVETVPSEAKPLPPKPKFEPLKPHEMSDGQIQFRKVNVPPHRYTPLKKAWMDIYTPIYEQMKIDVRMNLKARRVELKTRHDTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELYIESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKFAIENASKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERHKVYFVLMALELTCIGIKYGVSDHNPFQQISPTMLLFILALFSHVLALTADMSMPTNIITFHVSGVVGCEALLWILLAQFLWYYIINLLLLLLASFCFFNYIVHITHLLRRTISNDVQMSNMEPREAQV 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00776 523 Pfam Peptidase inhibitor I9 28 96 IPR010259 -
Cca01g00776 523 SUPERFAMILY Subtilisin-like 4 139 IPR036852 GO:0004252|GO:0006508
Cca01g00776 523 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 300 393 IPR036612 GO:0003723
Cca01g00776 523 CDD KH-I 320 366 - -
Cca01g00776 523 SMART kh_6 300 373 IPR004087 GO:0003676
Cca01g00776 523 PANTHER RIBONUCLEASE Y 180 394 - -
Cca01g00776 523 PANTHER RNA-BINDING PROTEIN PNO1 180 394 IPR039912 -
Cca01g00776 523 Gene3D K Homology domain, type 1 299 401 IPR036612 GO:0003723
Cca01g00776 523 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 15 100 IPR037045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00776 Cca-Chr1 10266948 10289652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00776 24 139 Subtilisin-like Serine Gene Family AT5G59810 52.713 7.31e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00776 K11884 - gmx:100788055 416.001