Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00774 ATGAAGATCACTGTCATGACTGCTGACGAACAAATTATCACGTTGGATGTGGATCCCCACGAATCTGTGGAAAACGTCAAAGCATTGCTCGAGGTTGAGACAAGTGTCCCTCTTCAACAACAGCAGCTTCTGTTTAATGGGAAGGAGGTGAGGAATTCTGAGAAGTTGAGTGCTATTGGTGTTAAGGATGATGATTtgctaatgatggtgtctggttctggcgccggtgctggtgccggtgctTCTAGTGGGTCTACCAATGATTTGAGCTTAAATGTTGATGGATCTGCTGTCAACCCTGGTGCTTTCCAGCAGCACATTAGACGTGACACTAATTTGATGGGCCAACTATTTCAGAGTGACCCAGAGTTGGCACAAGCTATTTTAGGGAATGATCTGAATAGACTGCAGGAAGTTTTACGATTGCGTCATCACCAAAGAGATGAATTAAAACGTCAGAAAGAAGAAGAGCTTGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCTCAAAAGAAGATTGAAGCTGCCATTCGCCAGAAAGGTATTGATGAAAATTGGGCAGCTGCTTTAGAACATAATCCAGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGATATGGAGGTTAATGGTGTCCCACTGAAGGCATTTGTTGATAGTGGAGCCCAGTCTACCATTATATCAAAAAGCTGCGCTGAGCGTTGTGGATTGTTGAGGCTTTTAGATCAGCGTTACAGAGGAATTGCTCATGGAGTTGGCCAGTCAGAAATATTGGGTCGTATTCATGTAGCTCCAATCAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTGGTGCTGGATTCTCCCAATATGGAATTTCTCTTTGGACTGGATATGCTCCGAAAGCACCAGTGTATAATTGATTTGAAAGAAAATGTTTTGCGAGTTGGTGGAGGAGAAGTTTCTGTGCCATTTTTGCAAGAGAAAGACATACCATCTCGGTTTCTGGATGAGGAAAAGTATGCTAAGGAAGCTGCAGGCTCTGGTGGTCTAGTTACATCAGGGAGCAATAATCCATCAACAGGAGGCCCCTCTTCTGGAGGAGCTTCTGGTAACAGGTCTAAGGATTCTGAATTTGAAGCCAAAGTTGCAAAGCTTGTTGAGTTGGGATTTGAAAGAAATGCAGTTATACAAGCTCTTCAATTATTCAATGGCAATGAGGAACAGGCTGCTGGGTTTCTTTTTGGGGGCTAA 1239 0.41 MKITVMTADEQIITLDVDPHESVENVKALLEVETSVPLQQQQLLFNGKEVRNSEKLSAIGVKDDDLLMMVSGSGAGAGAGASSGSTNDLSLNVDGSAVNPGAFQQHIRRDTNLMGQLFQSDPELAQAILGNDLNRLQEVLRLRHHQRDELKRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYRGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPSRFLDEEKYAKEAAGSGGLVTSGSNNPSTGGPSSGGASGNRSKDSEFEAKVAKLVELGFERNAVIQALQLFNGNEEQAAGFLFGG 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00774 412 CDD UBA_scDdi1_like 375 410 - -
Cca01g00774 412 SMART uba_6 374 411 IPR015940 -
Cca01g00774 412 SUPERFAMILY UBA-like 353 412 IPR009060 GO:0005515
Cca01g00774 412 SUPERFAMILY Ubiquitin-like 1 85 IPR029071 -
Cca01g00774 412 MobiDBLite consensus disorder prediction 342 370 - -
Cca01g00774 412 Pfam Aspartyl protease 181 303 IPR019103 GO:0004190|GO:0006508
Cca01g00774 412 CDD RP_DDI 188 311 IPR019103 GO:0004190|GO:0006508
Cca01g00774 412 SUPERFAMILY Acid proteases 189 304 IPR021109 -
Cca01g00774 412 Gene3D - 348 412 - -
Cca01g00774 412 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 369 412 IPR015940 -
Cca01g00774 412 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 410 - -
Cca01g00774 412 PANTHER AT13091P 1 410 - -
Cca01g00774 412 MobiDBLite consensus disorder prediction 345 368 - -
Cca01g00774 412 Pfam UBA/TS-N domain 375 408 IPR015940 -
Cca01g00774 412 PRINTS Ubiquitin signature 11 31 IPR019956 -
Cca01g00774 412 PRINTS Ubiquitin signature 32 52 IPR019956 -
Cca01g00774 412 SMART ubq_7 1 72 IPR000626 GO:0005515
Cca01g00774 412 Gene3D Acid Proteases 182 328 IPR021109 -
Cca01g00774 412 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Cca01g00774 412 Coils Coil 136 156 - -
Cca01g00774 412 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Cca01g00774 412 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Cca01g00774 412 Gene3D - 1 82 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00774 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 2.23e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00774 K11885 - gmx:100779464 735.717