Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00767 ATGGATAGTGTCTCGGAGTTTCCTTTGTTTGGTTCTGACCCATTTGACATTACACTTCTCCAAAATTTTCTCGAGGAGGAGGACCCACTTGTCTATTTATCCAATGATGATGTACCCAATGAACAGTCCCTGCAGCAACAACATGTTCCTTTTGGCGGTAAGTGTGTTTTCTTGCCGGATCCAGTGATTCAAAATCAACCAAATGGAGAAGGAGTTGCTAACTGTGTAGGGGGTTCATCATCCACCATGAGGGGTAAGGAACACATGATGCAAGATCAATTCTTGCATGCCTATGGCAATGATAATTTTATCAATGATGAAACATTCGGTAACTTCAGTAAACCGGAATTTGAGAATATTGGTCCACTCATTTACCAACATGAACATATGATGTCACTTCCGCATTGGCCACCGTCACCAAAGCCATTCTTTTGCAGTTGCTGTCAAGTTCTTAGACAAATAATTCACACCAATGGTTCTAGGTTTGACAAGCTTGAGATACATGGAACGATAGGGATGATTAGCCATGCAATAATCCGGAATACCACTCCGGGTGATCCTTCAAGCAATTATCAAATGGTTGATTTCTGTAACAGAAACAAAGAAGAAATTAAGAGTTTCCTAAAACAATACTGTGAGCAGCAAAATATATTCGGGTACATTATTATGAAAGATCCGTTGTCTGCGTATTATGATGCTCTCAGCACTGGAATGGATTGGGCTCAAGATATCAGTGACGAAGACGATGATTTGATATCAGAAAATGACGTGGAGCAAGATCAAGAGCCGGAGCCTGAACCTGAGAATGAAATGGCTTCAAATGCTAGACGACTTCAGAGGGAGAGAGTAGCGAAGATGACATTGGGTGATTTGAGCGATTACTTCCATATACCGATTAAGGAGACAGCGAAACTACTGGAAGTAAGCACTTCTGTGGTGAAGAAAGTATGCCGCAAGGCAGAGTTATATAGATGGCCCCAAAGAAAGGTGAAAAGTAATATGAGGAAGATCACAGTGCTCAGAAGAGGATTGGCTAATCCAGGAACAAGGGAAAAAACTCGAGTGGAAATTCAAAGACTTCAACAAGAAATGGTTGAGTATTGTGGTGGACTTGCCCCAACTGGAATAGAAATGCTCCAAGTATAG 1146 0.4145 MDSVSEFPLFGSDPFDITLLQNFLEEEDPLVYLSNDDVPNEQSLQQQHVPFGGKCVFLPDPVIQNQPNGEGVANCVGGSSSTMRGKEHMMQDQFLHAYGNDNFINDETFGNFSKPEFENIGPLIYQHEHMMSLPHWPPSPKPFFCSCCQVLRQIIHTNGSRFDKLEIHGTIGMISHAIIRNTTPGDPSSNYQMVDFCNRNKEEIKSFLKQYCEQQNIFGYIIMKDPLSAYYDALSTGMDWAQDISDEDDDLISENDVEQDQEPEPEPENEMASNARRLQRERVAKMTLGDLSDYFHIPIKETAKLLEVSTSVVKKVCRKAELYRWPQRKVKSNMRKITVLRRGLANPGTREKTRVEIQRLQQEMVEYCGGLAPTGIEMLQV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00767 381 Pfam RWP-RK domain 285 332 IPR003035 -
Cca01g00767 381 PANTHER PROTEIN RKD4 46 369 IPR044607 GO:0003700
Cca01g00767 381 MobiDBLite consensus disorder prediction 255 275 - -
Cca01g00767 381 ProSiteProfiles RWP-RK domain profile. 270 353 IPR003035 -
Cca01g00767 381 PANTHER RWP-RK DOMAIN PROTEIN 46 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00767 Cca-Chr1 10142807 10144788 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00767 253 332 AtRKD Transcription Factor Family AT4G35590 35.000 3.95e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Cca01g00767 RWP-RK 2.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00767 - - ccaj:109790026 715.301