Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00766 ATGGGGCGTATTCCTTGCTGCGAGAAGGACAACGTGAAAAGAGGACAGTGGACACCTGAGGAAGATAACAAGCTCTCGTCCTACATTGCTCAGCATGGAACTCGCAACTGGCGTCTCATTCCCAAGAATGCTGGCCTCCAGAGATGCGGAAAGAGCTGCAGACTAAGGTGGACTAATTACCTTCGTCCTGATCTCAAGCATGGCCAATTTTCGGATTCGGAAGGGCAAACCATTGTGAAGCTTCATTCAGTTTTTGGTAACAGATGGTCACTGATAGCAGCCCAGCTGGCAGGACGCACTGACAATGATGTGAAAAACCACTGGAACACCAAGCTGAAAAAGAAACTGTCAGGCATGGGTATAGACCCTGTCACCCACAAGCCATTTTCCCATCTAATGGCTGAAATTGCTACGACGTTGGCACCCCCACAGGCAGCACACCTAGCTGAAGCAGCCCTTGGCTGTTTCAAAGATGAGGTGCTCCACCTTCTTACTAGGAAGCCAATTAACTTCCAGGGTCAGCATTCGGCTGCAGCACTGGGGAATAGCTTCACTGATTACATTAATTGTAAGCCAGAAGAAAAGGATGCAACGGTTGAGAACCTATCTAAGGCCATACAACAAGAACCTCAAATGATGCCCGCAACTGCAACTTTTGCAATGCCAGTTTGCCCTACAATGCCAGGGTTTCAATTCTCTCCAGCATCTTTCGCCAATAAAGGGGATGCATCTCCATGGGGCCAAAGTGTATGTACTGGAAGCACATGCACAGCCATGGATCAGCACTCCCAGTTACATGAAAAACTTGAAGAGGTAAATGGTGCTGAGTCTGAGGCTACCAAGGAAATTAGAAATCTATCCAATATATTCAACTCAGATTGCGTCGTCTGGGATCTACCAGCAGATGATTTAATTAACCCTATGGTATAA 930 0.472 MGRIPCCEKDNVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDSEGQTIVKLHSVFGNRWSLIAAQLAGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTRKPINFQGQHSAAALGNSFTDYINCKPEEKDATVENLSKAIQQEPQMMPATATFAMPVCPTMPGFQFSPASFANKGDASPWGQSVCTGSTCTAMDQHSQLHEKLEEVNGAESEATKEIRNLSNIFNSDCVVWDLPADDLINPMV 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00766 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Cca01g00766 309 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca01g00766 309 Gene3D - 14 66 - -
Cca01g00766 309 CDD SANT 70 112 IPR001005 -
Cca01g00766 309 CDD SANT 17 61 IPR001005 -
Cca01g00766 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Cca01g00766 309 Gene3D - 68 128 - -
Cca01g00766 309 PANTHER TRANSCRIPTION FACTOR MYB80 1 309 - -
Cca01g00766 309 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca01g00766 309 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Cca01g00766 309 PANTHER F14D16.11-RELATED 1 309 - -
Cca01g00766 309 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca01g00766 309 SMART sant 66 114 IPR001005 -
Cca01g00766 309 SMART sant 13 63 IPR001005 -
Cca01g00766 309 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00766 Cca-Chr1 10138513 10139602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00766 1 171 MYB Transcription Factor Family AT5G56110 87.719 6.58e-113 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca01g00766 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00766 K09422 - gmx:100800764 551.206