Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00760 ATGGATTGGACTCTTCAAATTCTTTTGATGCAGGCATGTGCTACAAATCCTTATCAGGATCCGTATTATGGGGGCATGATGGCAGCTTATGGTCACCAACAGATGGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCGCTTGAGATGGCTCAAGAGCCTGTGTATGTTAATGCCAAACAGTACCAAGGAATTCTGAGGAGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAAGAAGCTAATAAAATCTAGAAAGCCATATCTGCATGAATCTCGGCATCAGCATGCTATGAGAAGGGCAAGGGGTACTGGAGGACGATTTGCAAAGAAAACTGATGCTGATGGCTCAAACAACTCGGGCAAGGAAAAGGATAATGGTACTGATTCTGTCCTCTCATCACAATCAATTAGTTCATCTGGTTCTGAACCTTTGCATTCTGACTCTGCCGAAACCTGGAATTCTCCTAACATGCAACAAGATGCAAGAGCATCAAAAGTGCACAACAGGTTTGGAGCTCCCAGTTACCAAAATGTCAGTGGCTCCTACCATAACCACAACGGTTTGCAATCTTCAGCATATCATTCTTCCTCAGGGGAAAGAATGGAGGAAAGGGCATGTTCAGGTCAGCAACTGAACCACAATTGA 660 0.4455 MDWTLQILLMQACATNPYQDPYYGGMMAAYGHQQMGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDADGSNNSGKEKDNGTDSVLSSQSISSSGSEPLHSDSAETWNSPNMQQDARASKVHNRFGAPSYQNVSGSYHNHNGLQSSAYHSSSGERMEERACSGQQLNHN 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00760 219 PRINTS CCAAT-binding transcription factor subunit B signature 89 112 IPR001289 GO:0003700|GO:0006355
Cca01g00760 219 PRINTS CCAAT-binding transcription factor subunit B signature 58 80 IPR001289 GO:0003700|GO:0006355
Cca01g00760 219 MobiDBLite consensus disorder prediction 127 168 - -
Cca01g00760 219 ProSitePatterns NF-YA/HAP2 subunit signature. 60 80 IPR018362 GO:0003677|GO:0016602
Cca01g00760 219 ProSiteProfiles NF-YA/HAP2 family profile. 55 115 IPR001289 GO:0003700|GO:0006355
Cca01g00760 219 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 57 112 IPR001289 GO:0003700|GO:0006355
Cca01g00760 219 MobiDBLite consensus disorder prediction 90 109 - -
Cca01g00760 219 MobiDBLite consensus disorder prediction 88 219 - -
Cca01g00760 219 Gene3D - 55 117 - -
Cca01g00760 219 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 13 216 IPR001289 GO:0003700|GO:0006355
Cca01g00760 219 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 13 216 - -
Cca01g00760 219 SMART cbf3 54 115 IPR001289 GO:0003700|GO:0006355
Cca01g00760 219 MobiDBLite consensus disorder prediction 175 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00760 Cca-Chr1 10042129 10046570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00760 13 217 CCAAT-HAP2 Transcription Factor Family AT3G20910 57.005 1.18e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Cca01g00760 CBFB_NFYA 3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00760 K08064 - gmx:100808378 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00760 01 10042129 10046570 Cca05g02065 05 40399159 40403084 PCT