Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00734 ATGGGATTTTGTTTAAAGCTTGGTTGTTTGATATTTAATGTAATTGACTTGTCTTATACTAGTACTGATTTATCTTTATTTTTATGTTTTGGTTTGTTTGCTGAATTGTTACAGATGTCGTATTCAAGGAGATCAAGgtattcttattctccttctccttctcCCTACAAACGATACAGTAGGTCCGTGTCCCGGTCGCCCTCTAGGTCGAGATCCAGAAGCCGTTCAAGGAGTTTATCAAGAGATGCAGAAAATCCAGGAAACAATTTGTATGTGACAGGATTGTCCCCTAGGATCACCAAGAGAGAACTGGAGAAGCATTTTGCTGCTGAGGGAAAAGTGATAGATGTTCATCTGGTGGTTGATCCTTGGACAAGGGAGTCCCGAGGGTTTGGCTTTGTGACAATGGCAACTGTTCATGAGGCTGATCGATGTGTAAAGTATCTAGATCGTTCTGTACTTGAAGGGCGTGTCATCACGGTGGAGAAGGCTAGAAGGCGACGTGGTCGAACCCCAACACCAGGGAGGTATCTTGGGCTGAGAACTATTCATGCACGACGCCGCTCTCCAAGTTACTCTCCTCGTCGCTCTCCTAGCTATTCACCTTACAGAAGAAGTTATAGTCGGTCTCCATATTCAGACCGTAGCAGGAGTCGTTCTTACTCTCCTGACTATCGGAGGAGATCATACTCACCTGATTATCGGAGGAGGTCTTACTCTCCATACTATAGCCGGTACAGGTCTTATTCTCGATATGATCGACGCAGGACATATTCTCGATCCCGCTCTCCTTATAGCAGGTCACCTGTTAGAAATCGTGACAGATCATACTCTCCCTACAACTCGCATGATCGCACCTACAGAAGGCACCGGTACCGGTCTGTTTCAGGGAGTGCCTCACCGGATGATCGATATTATGGAAGGCACCGTTACAGGTCTGTTTCTCGAAGTGCCTCACCACCCAGGCCAAGGAGAAGGTCAAGGAGGAGCCACTCACGGAGTGCCACTCCTGTTTCAAAGAGGAGCGACTCGCGAAGCTCTAAGAGGAGTGCTAAATATACGAAACGCTACTCAAGAAGCCCGAGTGTGAGTGCAAGTTCAAGATCAGTATCGAGGTCTAATACTCCTAGATCTACCTCTCCTTCAACCTGA 1152 0.4592 MGFCLKLGCLIFNVIDLSYTSTDLSLFLCFGLFAELLQMSYSRRSRYSYSPSPSPYKRYSRSVSRSPSRSRSRSRSRSLSRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVHEADRCVKYLDRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTIHARRRSPSYSPRRSPSYSPYRRSYSRSPYSDRSRSRSYSPDYRRRSYSPDYRRRSYSPYYSRYRSYSRYDRRRTYSRSRSPYSRSPVRNRDRSYSPYNSHDRTYRRHRYRSVSGSASPDDRYYGRHRYRSVSRSASPPRPRRRSRRSHSRSATPVSKRSDSRSSKRSAKYTKRYSRSPSVSASSRSVSRSNTPRSTSPST 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00734 383 MobiDBLite consensus disorder prediction 219 234 - -
Cca01g00734 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 159 IPR000504 GO:0003723
Cca01g00734 383 SMART rrm1_1 89 162 IPR000504 GO:0003723
Cca01g00734 383 MobiDBLite consensus disorder prediction 262 276 - -
Cca01g00734 383 Gene3D - 39 172 IPR012677 -
Cca01g00734 383 PANTHER TRANSFORMER-2-RELATED 47 338 - -
Cca01g00734 383 MobiDBLite consensus disorder prediction 45 92 - -
Cca01g00734 383 MobiDBLite consensus disorder prediction 356 383 - -
Cca01g00734 383 MobiDBLite consensus disorder prediction 251 383 - -
Cca01g00734 383 MobiDBLite consensus disorder prediction 45 67 - -
Cca01g00734 383 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 47 338 - -
Cca01g00734 383 MobiDBLite consensus disorder prediction 336 350 - -
Cca01g00734 383 MobiDBLite consensus disorder prediction 165 237 - -
Cca01g00734 383 MobiDBLite consensus disorder prediction 319 335 - -
Cca01g00734 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 166 IPR000504 GO:0003723
Cca01g00734 383 MobiDBLite consensus disorder prediction 192 218 - -
Cca01g00734 383 SUPERFAMILY RNA-binding domain, RBD 79 190 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00734 Cca-Chr1 9691455 9695252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00734 89 193 Eukaryotic Initiation Factors Gene Family AT2G36660 32.381 4.43e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00734 - - bhj:120083063 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00734 01 9691455 9695252 Cca01g00734 01 9691455 9695252 ECH