Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca01g00732 | ATGTCTCAATTAACTCAACAATACTATCACAATGGTGGGAAGGGTCTTGACCATGCTTTGCAGATTATTGAAAATAAGTTGATGAAGGATGACCTAGAAGAGCAATGTGAGAATATTGAACATTACAACATATTTTTCAATGACTATCATCAATTAATGATGAGTTTACAAGAACAACCGTCCAACACCACCACTCAATGCAAGGAATATATTCATTGGACTCAAGAACAACATAGACAACACTATCACAATGGTGGAAAGGGTCCTGACCAAGGTTTACAAATAATCGAAAATGAGTTAATGAAGGATGACCTAGAAAAGCAGTGTGAGAATATTGAAAACTACACCATGATTTTCAATGACTATCATCGGTTGATGACAAATTTACAAGAACAGTCATTCAACACCGTCAATCAAGTTCTTATCAAGTCATCGGAAGACTCACCATTGTTAGTTCAACGCAAAAAATTTACTCGTTGGACTGATGATGAACATAGGTTATTTCTGGATGGACTTGAGAAATATGGTAAGGGAAATTGGAAAGAAATTTCAAGATATATTGTAACAAAATCTAAAAGCCAAGTATCTAGCCATGCTCAAAAGTACTTCCTTCGCAAGAATGCACAGAAGAAAAGAAGAAGTATCCATGATACAACCTTAGAAGACATAGACAGAAAGGTTTCTTCCCGTATTTATCAACAAAATCGGGTTCTTCCAACTCCAAATTGTGCGATGCAGCCACAAAATATGCAACAAGCACAATATATGTCGTAG | 774 | 0.3579 | MSQLTQQYYHNGGKGLDHALQIIENKLMKDDLEEQCENIEHYNIFFNDYHQLMMSLQEQPSNTTTQCKEYIHWTQEQHRQHYHNGGKGPDQGLQIIENELMKDDLEKQCENIENYTMIFNDYHRLMTNLQEQSFNTVNQVLIKSSEDSPLLVQRKKFTRWTDDEHRLFLDGLEKYGKGNWKEISRYIVTKSKSQVSSHAQKYFLRKNAQKKRRSIHDTTLEDIDRKVSSRIYQQNRVLPTPNCAMQPQNMQQAQYMS | 257 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca01g00732 | 257 | Pfam | Myb-like DNA-binding domain | 159 | 203 | IPR001005 | - | |
Cca01g00732 | 257 | ProSiteProfiles | Myb-like domain profile. | 152 | 203 | IPR001005 | - | |
Cca01g00732 | 257 | PANTHER | TRANSCRIPTION FACTOR SRM1 | 97 | 249 | - | - | |
Cca01g00732 | 257 | ProSiteProfiles | SANT domain profile. | 155 | 207 | IPR017884 | - | |
Cca01g00732 | 257 | CDD | SANT | 159 | 203 | IPR001005 | - | |
Cca01g00732 | 257 | SMART | sant | 156 | 205 | IPR001005 | - | |
Cca01g00732 | 257 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 155 | 206 | IPR006447 | GO:0003677 | |
Cca01g00732 | 257 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 153 | 207 | IPR017930 | - | |
Cca01g00732 | 257 | Gene3D | - | 157 | 208 | - | - | |
Cca01g00732 | 257 | PANTHER | TRANSCRIPTION FACTOR KUA1 | 97 | 249 | - | - | |
Cca01g00732 | 257 | SUPERFAMILY | Homeodomain-like | 153 | 207 | IPR009057 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca01g00732 | Cca-Chr1 | 9668988 | 9669951 | Tandem |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB-related | Cca01g00732 | Myb_DNA-binding | 1.3e-11 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca01g00732 | - | - | mtr:MTR_5g088010 | 105.145 |