Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00732 ATGTCTCAATTAACTCAACAATACTATCACAATGGTGGGAAGGGTCTTGACCATGCTTTGCAGATTATTGAAAATAAGTTGATGAAGGATGACCTAGAAGAGCAATGTGAGAATATTGAACATTACAACATATTTTTCAATGACTATCATCAATTAATGATGAGTTTACAAGAACAACCGTCCAACACCACCACTCAATGCAAGGAATATATTCATTGGACTCAAGAACAACATAGACAACACTATCACAATGGTGGAAAGGGTCCTGACCAAGGTTTACAAATAATCGAAAATGAGTTAATGAAGGATGACCTAGAAAAGCAGTGTGAGAATATTGAAAACTACACCATGATTTTCAATGACTATCATCGGTTGATGACAAATTTACAAGAACAGTCATTCAACACCGTCAATCAAGTTCTTATCAAGTCATCGGAAGACTCACCATTGTTAGTTCAACGCAAAAAATTTACTCGTTGGACTGATGATGAACATAGGTTATTTCTGGATGGACTTGAGAAATATGGTAAGGGAAATTGGAAAGAAATTTCAAGATATATTGTAACAAAATCTAAAAGCCAAGTATCTAGCCATGCTCAAAAGTACTTCCTTCGCAAGAATGCACAGAAGAAAAGAAGAAGTATCCATGATACAACCTTAGAAGACATAGACAGAAAGGTTTCTTCCCGTATTTATCAACAAAATCGGGTTCTTCCAACTCCAAATTGTGCGATGCAGCCACAAAATATGCAACAAGCACAATATATGTCGTAG 774 0.3579 MSQLTQQYYHNGGKGLDHALQIIENKLMKDDLEEQCENIEHYNIFFNDYHQLMMSLQEQPSNTTTQCKEYIHWTQEQHRQHYHNGGKGPDQGLQIIENELMKDDLEKQCENIENYTMIFNDYHRLMTNLQEQSFNTVNQVLIKSSEDSPLLVQRKKFTRWTDDEHRLFLDGLEKYGKGNWKEISRYIVTKSKSQVSSHAQKYFLRKNAQKKRRSIHDTTLEDIDRKVSSRIYQQNRVLPTPNCAMQPQNMQQAQYMS 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00732 257 Pfam Myb-like DNA-binding domain 159 203 IPR001005 -
Cca01g00732 257 ProSiteProfiles Myb-like domain profile. 152 203 IPR001005 -
Cca01g00732 257 PANTHER TRANSCRIPTION FACTOR SRM1 97 249 - -
Cca01g00732 257 ProSiteProfiles SANT domain profile. 155 207 IPR017884 -
Cca01g00732 257 CDD SANT 159 203 IPR001005 -
Cca01g00732 257 SMART sant 156 205 IPR001005 -
Cca01g00732 257 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 155 206 IPR006447 GO:0003677
Cca01g00732 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 153 207 IPR017930 -
Cca01g00732 257 Gene3D - 157 208 - -
Cca01g00732 257 PANTHER TRANSCRIPTION FACTOR KUA1 97 249 - -
Cca01g00732 257 SUPERFAMILY Homeodomain-like 153 207 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00732 Cca-Chr1 9668988 9669951 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca01g00732 Myb_DNA-binding 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00732 - - mtr:MTR_5g088010 105.145