Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00731 ATGTCTCAATTAACTCAACAATACTATCACAATGGTGGAAAGAGTCTTGATCACACTTTACAGATTATTGAAAATGAGTTGATGAAAGATGAACTAGAAGAACAATGTAAAAATATTGAACACTACAATATAATTTTCAATGACTATCATCGATTGATGACGGGTTTACAAGAGCAGTCCTCCAACATCATCACTCAAGTTCTTCCCAATTCATCGGATAACTCATCAATATTAGCTCAACGCAAGAAATATACTCATTGGACTGAAGATGAACATAGgttatttCTGATTGGACTTGAGATATATGGCAAGGGAAATTGGAAAAAAATTTCACAATATATTGCAACAAAATCTCAAAGCCAAGTGTCTAGCCATGCACAAAAGTTCTTCCTTCGCAAGAATAATGCATTGAAGAAAAGAAGAAGCATCCATGATACAACCTTACAAGACATGGACACAAAGGTTCCTGACCACATTTATCAACCAAATCCGGTTCTTCCAACTCCAAATTTTGTGATGGATCCACAAAATATGCATCAAACACAATATATGTCGCAGAATTCGGTTTCTTGTCTACATCTTGCAGTACAACAATTTCTTAAATGA 606 0.3449 MSQLTQQYYHNGGKSLDHTLQIIENELMKDELEEQCKNIEHYNIIFNDYHRLMTGLQEQSSNIITQVLPNSSDNSSILAQRKKYTHWTEDEHRLFLIGLEIYGKGNWKKISQYIATKSQSQVSSHAQKFFLRKNNALKKRRSIHDTTLQDMDTKVPDHIYQPNPVLPTPNFVMDPQNMHQTQYMSQNSVSCLHLAVQQFLK 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00731 201 CDD SANT 87 130 IPR001005 -
Cca01g00731 201 PANTHER TRANSCRIPTION FACTOR SRM1 23 170 - -
Cca01g00731 201 ProSiteProfiles SANT domain profile. 87 134 IPR017884 -
Cca01g00731 201 SMART sant 83 132 IPR001005 -
Cca01g00731 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 134 IPR017930 -
Cca01g00731 201 PANTHER TRANSCRIPTION FACTOR KUA1 23 170 - -
Cca01g00731 201 Gene3D - 84 135 - -
Cca01g00731 201 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 82 133 IPR006447 GO:0003677
Cca01g00731 201 ProSiteProfiles Myb-like domain profile. 79 130 IPR001005 -
Cca01g00731 201 SUPERFAMILY Homeodomain-like 80 135 IPR009057 -
Cca01g00731 201 Pfam Myb-like DNA-binding domain 86 128 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00731 Cca-Chr1 9656549 9657242 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca01g00731 Myb_DNA-binding 1.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00731 - - gsj:114396841 102.064