Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00729 ATGCCAGTCATCGCCGCCAAGCGCACGCTCCGCTCCCACCCCTCCTCGCCCCCCCGCAAGTCCCCGCGCCGATGCCTCGCCGCCACCCCCAAAGCTATCAGATTCGCCGACGAAAACCAACCCGATCCGGCAGCTGTGAAGCCCAAGTGGAATCCCAAAGACGGTGAGCAGTTGAAGATGGTGAAGTTGGCATTGCACTTGTCCACTGCTCCTTCTTCGGTTGTGTGTCGCGAGGAGGAGCAGAGTGTGGTGTTAGGGTTCTGCAAGGGCTGCGTTGAGCATCAAAAGGCTGGGAGTCTCTACTTATGCGGGTGTCCCGGAACTGGGAAATCGTTGTCTATGGAGAAAGTGAAAGAGCAGTTACTCAATTGGGCTACCGAGGCAGGTCTTCCAGGACCAGATGTTTTATCTCTAAATTGTACAACCCTTGCAAATACATCTGATATTTTTACAAAGATACTTGAGTTAAACCAACCTCAGGGTAAAAAGGTTTCAGCCACACCGTTACAGCAACTTCAGAACATGTATTCTCAGAAATCTTCTATGAAGAAGATGACGTTAATAGTGGCTGATGAATTAGATTATTTGATAACCAAAGACAGAGCCGTTCTCCATGATCTTTTCATGCTCACCACCTTTCCTTTCTCTAGATGTATATTAATAGGTGTAGCAAATGCAATTGATCTAGCTGATCGGTTTCTTCCAAGGCTTACATCATTAAATTGCAAGCCTATTGTTGTAAATTTTCGAGCTTACACTAAAGATCAGATCCTCAAGATTCTTGAAGAAAGGTTAAATGAACTTCCTTACACTGTCTTCCAAAAGCAAGCCCTGGAACTGTGTGCTAGGAAAGTTGCTGCAGCTTCTGGAGACATGCGGAATGCTCTATGTATATGCAGGAGTGCAATAGAGATGCTTGAAGCAGAAATTAGAGAATCTGCGTGCAATTTGAATACTTCATTGGAAGAGAAATCTCTTAATCTTGCTACATCTCCTGATTTTATCAAGAAACGAGAATTTGATGTTGTAAGGACTGATCATATGGCTCTTACCTTGTCCAAGACATATAGATCACCGGTGGTGGATACAATACAAGCTCTTCCACATCATCAGCAGATTATACTCTGCTCATCTATGAAACATTTTCTTGGTGCCAAGAAAGATACAAACCTTGGAGAGTTGTATAAATCGTACGTGGAGTTATGCAAATCATCTATAATTCCTCCAGCAGGATTTTTAGGAATTTTAGAATTTTCAAACATGTGCAGAGTGCTAAATGACCAGGTATTTAAGACAATTTCATTTGATGTTGGATTTCTAGATGTAGCTCCCTGGAACCGGATGGATTTTGTCTTAAAGCGTGCTTTATCAATGAGGGAAAGTGATAGTAGGTGA 1395 0.4337 MPVIAAKRTLRSHPSSPPRKSPRRCLAATPKAIRFADENQPDPAAVKPKWNPKDGEQLKMVKLALHLSTAPSSVVCREEEQSVVLGFCKGCVEHQKAGSLYLCGCPGTGKSLSMEKVKEQLLNWATEAGLPGPDVLSLNCTTLANTSDIFTKILELNQPQGKKVSATPLQQLQNMYSQKSSMKKMTLIVADELDYLITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLTSLNCKPIVVNFRAYTKDQILKILEERLNELPYTVFQKQALELCARKVAAASGDMRNALCICRSAIEMLEAEIRESACNLNTSLEEKSLNLATSPDFIKKREFDVVRTDHMALTLSKTYRSPVVDTIQALPHHQQIILCSSMKHFLGAKKDTNLGELYKSYVELCKSSIIPPAGFLGILEFSNMCRVLNDQVFKTISFDVGFLDVAPWNRMDFVLKRALSMRESDSR 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00729 464 MobiDBLite consensus disorder prediction 1 25 - -
Cca01g00729 464 Coils Coil 303 323 - -
Cca01g00729 464 Gene3D - 55 242 IPR027417 -
Cca01g00729 464 Pfam AAA lid domain 273 308 IPR041083 -
Cca01g00729 464 Gene3D - 243 364 - -
Cca01g00729 464 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 16 429 - -
Cca01g00729 464 PIRSF Cdc6 5 439 IPR016314 GO:0006270|GO:0051301
Cca01g00729 464 Pfam AAA domain 95 212 IPR003593 -
Cca01g00729 464 CDD AAA 92 238 - -
Cca01g00729 464 Gene3D - 365 430 IPR036388 -
Cca01g00729 464 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 16 429 - -
Cca01g00729 464 SUPERFAMILY "Winged helix" DNA-binding domain 360 417 IPR036390 -
Cca01g00729 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 312 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00729 Cca-Chr1 9603021 9608645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00729 4 429 Core DNA Replication Machinery Family AT1G07270 58.199 1.27e-173 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00729 K02213 - gmx:100791200 734.947