Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00726 ATGACAAGCATAGCAGCAGGAGGTTCCCTTATTCCACTTCATGGATGTGGAAATTTAAGGGTCACTAACCCTTCCATTTCTTTAGCTGGTCCTCCTTTGACAGCCATAGATAGGTTTTTGTGGGGACAACAACAACAACAAAGCCACTATGCTCAGAAGCAACAGCCACAGAACGTTGCAAACAATATTAGCCATGCAAGTGCTTTGGATGGTAATAGTTTTGGGGGTTCAACCTACAAGATCATGTGGCCTAATGGTATTACTCAAGAAGTAAGCTTGGTTGAACAGCTTTTAGCAAATGATCATGAAGAGGCTCTGAATTGGTCACAACAAGTCCCATCACTGTGCTTGAAAGATGATGTGCATGTTTCAGGGAAGAAGAATTTCAATGTGGTGGGACGAAGACCTAAGAAAGGGTCTGTGCCCTTGATCAAAGGACAGTGGACTGATGAAGAAGACAGGAAACTGTTGAAGTTGGTGAAGCAGCATGGTGTAAGAAAATGGTCTCAAATAGCTGAGAAGTTGGATGGAAGGGCTGGCAAACAGTGTAGAGAGAGATGGCATAATCATCTGAGACCTGATATTAAGAAAGATAGTTGGAGTGAAGAAGAGGAGAGGATATTAGTAGAAAGCCATGCGATGATTGGAAACCGTTGGGCAGAGATTGCAAAGCGCATTCCAGGAAGAACAGAAAATGCCATAAAGAACCATTGGAATGCCACCAAAAGAAGACAAAACTCAAGAAGAAAGAACAAAAGAGCAGCAACCTCAAATGGAAAACCACACTCCTCTATTCTCCAAGACTACATCAGAACCTTGACTCTCACCAAAACTGTCACCACTCCCTCTATTCAACAACACCACCCTAAACTCTCTGATTCTCTCTCCATTGACATCAATTATTCCTCATCACCACCACTAGTGGCTGAGTCATACGATGATGAGATGCTCTTCATGCAACAACTTTTCAAGGAGAATAATGCCAATGTTGATGAATCTCTTAAGCACTGCTCCAGGAATAATAGTAATAATAACTCTTCAGCCTCATTTGTTTCTTGCTACGATCAAAGTAATGATGATGGTGGTGGTCAGATTCTCACTGATGTCAGTCATTGTGGGTTTGCTCATTCCAACCCTAACAACACAAACAACGTTAACTCACATAATAACATTTGCTTGGATGAGAGTTTGTTCATCTCTAGAAACCCTAGCTACCTTGATTCTGATGTCTGTTTCTCTCACTTGCTCAATGGAACTTCTGGTTCATCATTTTGCTATAACTATGGGATTCACAACCAGAATATGGATATGCAGCAGGTGAATGATCAAGATAATTGGTTACAAGGAAAGAGTGGAGTTTGTTTCTTCTGA 1371 0.4143 MTSIAAGGSLIPLHGCGNLRVTNPSISLAGPPLTAIDRFLWGQQQQQSHYAQKQQPQNVANNISHASALDGNSFGGSTYKIMWPNGITQEVSLVEQLLANDHEEALNWSQQVPSLCLKDDVHVSGKKNFNVVGRRPKKGSVPLIKGQWTDEEDRKLLKLVKQHGVRKWSQIAEKLDGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVESHAMIGNRWAEIAKRIPGRTENAIKNHWNATKRRQNSRRKNKRAATSNGKPHSSILQDYIRTLTLTKTVTTPSIQQHHPKLSDSLSIDINYSSSPPLVAESYDDEMLFMQQLFKENNANVDESLKHCSRNNSNNNSSASFVSCYDQSNDDGGGQILTDVSHCGFAHSNPNNTNNVNSHNNICLDESLFISRNPSYLDSDVCFSHLLNGTSGSSFCYNYGIHNQNMDMQQVNDQDNWLQGKSGVCFF 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00726 456 Pfam Myb-like DNA-binding domain 148 205 - -
Cca01g00726 456 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 195 IPR017930 -
Cca01g00726 456 PANTHER MYB PROTEIN-RELATED 44 421 - -
Cca01g00726 456 ProSiteProfiles Myb-like domain profile. 145 191 IPR001005 -
Cca01g00726 456 MobiDBLite consensus disorder prediction 237 262 - -
Cca01g00726 456 CDD SANT 199 242 IPR001005 -
Cca01g00726 456 ProSiteProfiles Myb-like domain profile. 192 242 IPR001005 -
Cca01g00726 456 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 246 IPR017930 -
Cca01g00726 456 PANTHER MYB TRANSCRIPTION FACTOR 44 421 - -
Cca01g00726 456 MobiDBLite consensus disorder prediction 241 256 - -
Cca01g00726 456 SMART sant 196 244 IPR001005 -
Cca01g00726 456 SMART sant 144 193 IPR001005 -
Cca01g00726 456 CDD SANT 148 191 IPR001005 -
Cca01g00726 456 Gene3D - 199 265 - -
Cca01g00726 456 Gene3D - 144 196 - -
Cca01g00726 456 SUPERFAMILY Homeodomain-like 142 238 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00726 Cca-Chr1 9542455 9545010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00726 29 422 MYB Transcription Factor Family AT5G58850 39.437 5.06e-77 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca01g00726 Myb_DNA-bind_6 1.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00726 K09422 - gmx:100786295 529.635