Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00724 ATGGCATCCATTGCCACCTTCTTCAACAACTTCTTTCTCTACCTCCTCATCCTCCTACTTCACCTAGGTTGCTTCATCTTCACCACCACCACCAAAAAAGACGACAACCACCACGCGCCGCCGTTAAAGAAACGAAAAATCTCGCCTTTATCCCAACCCTCCTCCCCTTCCCACCCCAAATTCAAAACCCACAAAGCCATCTCCTCTTCTTGGCATTTCATCAAACACCTCTTCTCCACCAAGTCCTGCAAAAaccccaccaccaccaccgccaccgccgccgcctcatcccctcaatccaccaccaccgtcactaccaccGTCTCCGCCGCCGCCGCAAGTTCCCTCATTTCCTCATCACAACCCGACCCGGATAGAAAACAACCCGAATCCGACATCGGCGCCGACACGAACCTCTTCTTCCCCCTCCGCAACGACATCTTCCCCTGCACCGCGTGCGGCGAGATCTTCCAGAAGCCCCACCTCTTAGAAACCCACCAAACCCTCAAACACGCGGTTTCGGATCTACCCGGATCCGACCCGGGTCACAACATCGTCCAAATCATCTTCAAATCGGGTTGGCCCGAATCCAAACCCTTCCCCAACGTGACCCGCGTCCTCAAGATCCACAACAGCCCCAAGATCCTCGCCAAGTTCGAGGAGTACCGCGAGGCCGTCAAGGCCAAGGCGGCGCGTCACGGCGCCCTCACGCGCCGCCCCGACGAGCGCTGCATCGCCGACGGCAACGAGCTCATGCGCTTCCACTGCTCCACCTTTCTATGTTCCCTGGGACACAACGGGGATTCCTCAATTTGTTCGCAGCAATTTTGTAACGTTTGCGGAATAATTAAGTCCGGATTCTCGTCCAAGTTGGACGGAATCGCCACGCTGTCCACCAGCTGGCGGGCCCACGTGGCGATTCCTGAAGACTTGGAACGAGAATTTCGCTTCATGAATGTGAAGCGGGCCATGCTCGTTTGTAGGGTGATTGCGGGTCGGGTTGGGTCGGATTTAGACGAAGCGGAAAAAGAGGATGGGGGTTTTGATTCGGTGATGGCGAGGGGAGAGAGTGGAGTTTACACCCGGCTTGATGAGGAGGAGCTGTTGGTGTTTAATCCTAGGGCTCTGCTTCCTTGCTTTGTGATTGTGTATAGTGTGtga 1161 0.5168 MASIATFFNNFFLYLLILLLHLGCFIFTTTTKKDDNHHAPPLKKRKISPLSQPSSPSHPKFKTHKAISSSWHFIKHLFSTKSCKNPTTTTATAAASSPQSTTTVTTTVSAAAASSLISSSQPDPDRKQPESDIGADTNLFFPLRNDIFPCTACGEIFQKPHLLETHQTLKHAVSDLPGSDPGHNIVQIIFKSGWPESKPFPNVTRVLKIHNSPKILAKFEEYREAVKAKAARHGALTRRPDERCIADGNELMRFHCSTFLCSLGHNGDSSICSQQFCNVCGIIKSGFSSKLDGIATLSTSWRAHVAIPEDLEREFRFMNVKRAMLVCRVIAGRVGSDLDEAEKEDGGFDSVMARGESGVYTRLDEEELLVFNPRALLPCFVIVYSV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00724 386 MobiDBLite consensus disorder prediction 115 134 - -
Cca01g00724 386 PANTHER NUCLEIC ACID BINDING PROTEIN 3 385 - -
Cca01g00724 386 SUPERFAMILY ADP-ribosylation 175 385 - -
Cca01g00724 386 Gene3D - 172 385 - -
Cca01g00724 386 MobiDBLite consensus disorder prediction 34 62 - -
Cca01g00724 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 172 IPR013087 -
Cca01g00724 386 ProSitePatterns Zinc finger C2H2 type domain signature. 150 171 IPR013087 -
Cca01g00724 386 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 385 - -
Cca01g00724 386 MobiDBLite consensus disorder prediction 48 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00724 Cca-Chr1 9506413 9507573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00724 71 386 C2H2 Transcription Factor Family AT2G29660 53.374 1.23e-107 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca01g00724 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00724 - - gmx:100785244 610.527