Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00715 ATGAAGTGGGAAATGGAGATCCTCCCTCCTGCATCACCTTACATGTACAACTCCAGTTGGCTTCTGGATGATAACAGGAACAGCACCAAGTGGACCCCTGCAGAGAACAAGCTGTTTGAGAATGCTCTTGCAGTGTATGATAAGGACACACCGGATCGGTGGCACAAAGTGGCTGAGATGATTCCAGGGAAGACAGTTATGGATGTGGTGAAGCAGTACAAGGAGCTGGAAGCTGATGTTTGCAACATAGAAGCTGGTTTGATCCCAATTCCTGGTTACAGCACCACCTCACCCTTCACCCTAGACTGGGTGAACACTCCTGGCTATGATGGCTTCAAAGGACTCGCTGCTAAGAGATCCTCCTCTGGTAGACCCCCTGATCAGGAACGGAAGAAAGGTGTGCCATGGACTGAAGAGGAACACAAGTTGTTTCTACTGGGGTTGAAAAAGTATGGCAAAGGTGATTGGAGAAACATATCACGCAATTTTGTGATTACTCGGACGCCAACTCAAGTTGCTAGTCATGCTCAGAAGTACTTCATCAGACAACTTTCAGGAGGCAAAGATAAGAGGAGGGCTAGCATCCATGACATAACAACAGTTAATCTTACAGAAAGTACTACCAGGAGTTCTCCTTCTGAAGACAGCAAGAGATCCACTTCACCACCACAGCCTTCCATGATGCTCTCACACCACCAGCAGCCGAATTCTATAGCCGCCTCGTCCGGCATGAATTTTCAGTGGAGCAATCAGCCAAATGGAGTAGCAGCTATGGCTCTCAACCCTGCACATGAACAAGTGTTCATGTCTCCTTATGGCCTTAACTCCTATGGTTTCAAGGTGCAGGGCCAGAGTCTGCACAGAAGTCCTCTTCATGAGTCTTCTTACTTAGGACCTCAGACACAGAACATGGTTTTCCAAATGCAACCCTCCCAACATTATTCCCATGCATGA 954 0.4769 MKWEMEILPPASPYMYNSSWLLDDNRNSTKWTPAENKLFENALAVYDKDTPDRWHKVAEMIPGKTVMDVVKQYKELEADVCNIEAGLIPIPGYSTTSPFTLDWVNTPGYDGFKGLAAKRSSSGRPPDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTESTTRSSPSEDSKRSTSPPQPSMMLSHHQQPNSIAASSGMNFQWSNQPNGVAAMALNPAHEQVFMSPYGLNSYGFKVQGQSLHRSPLHESSYLGPQTQNMVFQMQPSQHYSHA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00715 317 Gene3D - 134 184 - -
Cca01g00715 317 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Cca01g00715 317 Pfam Myb-like DNA-binding domain 30 74 IPR001005 -
Cca01g00715 317 SUPERFAMILY Homeodomain-like 29 84 IPR009057 -
Cca01g00715 317 SMART sant 27 79 IPR001005 -
Cca01g00715 317 SMART sant 132 182 IPR001005 -
Cca01g00715 317 MobiDBLite consensus disorder prediction 116 135 - -
Cca01g00715 317 SUPERFAMILY Homeodomain-like 130 183 IPR009057 -
Cca01g00715 317 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 291 IPR043363 -
Cca01g00715 317 Gene3D - 23 90 - -
Cca01g00715 317 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Cca01g00715 317 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Cca01g00715 317 CDD SANT 135 180 IPR001005 -
Cca01g00715 317 MobiDBLite consensus disorder prediction 197 236 - -
Cca01g00715 317 MobiDBLite consensus disorder prediction 191 236 - -
Cca01g00715 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Cca01g00715 317 CDD SANT 30 76 IPR001005 -
Cca01g00715 317 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 291 - -
Cca01g00715 317 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Cca01g00715 317 ProSiteProfiles Myb-like domain profile. 23 77 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00715 Cca-Chr1 9365367 9368115 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca01g00715 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00715 - - gmx:100784163 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00715 01 9365367 9368115 Cca01g00715 01 9365367 9368115 ECH
Cca01g00715 01 9365367 9368115 Cca05g01567 05 34834403 34836859 ECH
Cca01g00715 01 9365367 9368115 Cca01g01834 01 42742172 42744961 ECH
Cca05g01238 05 29957638 29960043 Cca01g00715 01 9365367 9368115 ECH
Cca07g01537 07 39782663 39785324 Cca01g00715 01 9365367 9368115 ECH
Cca01g01834 01 42742172 42744961 Cca01g00715 01 9365367 9368115 ECH