Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00707 ATGCCTGTGATTGACTATGACTTAGCACTTCTTTTTCAACCAATGTTGATGCTTGGAATCAGTATTGGAGTTGCTTTCAATGTGATTTTCCCTGACTGGATGCTAACAACTTTGTTAATAGTAGTTTTCATAGGCCTTTCAGTCAATGCATTCTTAAAGGGTGTCCAAACATGGAAAAAAGAAACCATTATTATGAAGGAAGCTAGGCAGAATTCACGGCTAAATGATAATGGAAGAACCGATAAAATGCTGCACAACTTCAAACAGAAGACACGGTCAATGGAAGTCAAACAAATACCAACCAACCAAGGAAAAAAGTTTCTGAAAAAATTACATTACAAATTGCTCAGCTATGTATTGGGTATTGAATCTAATTGCAGGTCCCTGTCACTGTTGGAACAACTTTATATGAAGCCGTGCTTCTATATACAAAGGGCAGAGAGTGATATCCTCAAAGGGATTCATCTTGGGACCCCTTTTCATTGGATTAGGAATTCCTCCTCAGCACTTTACTTTGTAGCTGTAGCCACTGCTGCTGCACTTTCTGGGCAGCATTTGGTGAGAAAGCTTATTGCTATACTGGGGAGAACCTCTTTGATCATTTTCATCCTTGCGCTCACAGTTTTTGTGAGTGGCAAGTGCAATTTTCGGAGATTCTTTTGGATTCTTCCTTTTAGTGATCAGGGAGTGTATCTAGGGTTTGTGGCGATGGGAAAGGAAGCACAGTATTCATCCCAGACAGAGTCCACACCTTTCAAGCGCAAGTACGCCCCTCACACCGCCATCCAAACCAAGCGTACCAAGCCCGAATACGGTGCTCCTTCCATTTCCTTTGATTCCATCGATGTGAAGCCTCAGTGCTTATCAGCTGCTAAAAATTTGTTGAAGAAAAAATCCTCCCTTGAAGATGATCATGATGAAGAGAAGACTGCTCTATGCTCACCATTCGTCTGTGGTATATGTTTTGATTACAAACCGGTATCTGATATGTTACATGGCAAGTGTAACCACCCTTTTTGTACTCTCTGCATATCCAAACATGTGGCTACTCAAATACACCAGAACATTCTCAAGGTGAATTGTCCATACCCTAACTGTCATGTGGAATTGGAGCCTCAGTTTTTCCACGCCATTTTGCCCGCTGAAGTTGTTGTTAGATGGGAAACTGCGAGGTGCGAGTCTTTGCTTGTTGGGTTGGAGAAGACTTATTGCCCCTATAAGGATTGTTCTGTGTTGTTGGTGAATGATGGAGGAGAAGTTGTGACCAGTGCTGAGTGCCCCTCTTGTCATAGGCTATTTTGTGCACAGTGTAAGGTCCCTTGGCATGGAAGCATGAGTTGTCAGGATTTCCAAATGAAGACGAATATGGATGAAAAAGAGTTGGATAACAAGTTTTCAAGCTGGCAGAAGGGGAAAATTGGCAGAAATGTCCTCAGTGCAATATGTTTGTGCAGAGACGTGAAGGATGTGAACATATTACTTGCAGGTGTGGATGCAACTTCTGCTACTGTTGTGGGGAGAATTGGAGTCTCCCAAACCCCCTTTATTCTCCTCCGTCGCGCGGAGCGCCTCCTTAGCCGCCGCAGCGTCGCCTCGCAGTCACCGGACCGATCCATCAGGAGCCTTCCAATTCCCCGCCCGCACCTGTTCTCCACCGCCACCCCGAAGACCCAAAACCCTCAATTGACCTCACCCCGACATGAAAAGCTTCAATCCCGGAGGTTTTGTTGTTTGTGCCTCTTGCTTTTGAGAACTGATTCAAAAACACATTATCTCCCTGGAATTACAGGAGCAGCTCTACTTATGAACGTTTTGCCCCGCGTGGGAACTGAACCCATTGCCCTTGTTGCTTCAAGCTCACTTGAGCAATTTCCTTCCTCTAGCCTCCTTGTCAGGCCGATTTtCGGAGGGCGCCGACATCGGGGCGGGGGCGCCGTTGGAGACGGCGAAACCGGGGAAAGCGACGGTAACGACGAGAGCGGCGGAGTCGGAGAAAGAGGGGTCGTTTTCTTCGTCGTCATCCTTTTCATATTCTTCGTCCTGTTGGGACTTGTCGTCGTCGTCCGTGTCCTCTTCGCGGAAAACGACGTCGTGTTGCTCCTGAAGGACCGATCCGGCAATGGCGAGGCGGCGCTGCCGCGACTGGAGGAGGCATTGCACGTGGCAGAGGAGAATGAGGGGGGTTTGAAAAACTAA 2196 0.4686 MPVIDYDLALLFQPMLMLGISIGVAFNVIFPDWMLTTLLIVVFIGLSVNAFLKGVQTWKKETIIMKEARQNSRLNDNGRTDKMLHNFKQKTRSMEVKQIPTNQGKKFLKKLHYKLLSYVLGIESNCRSLSLLEQLYMKPCFYIQRAESDILKGIHLGTPFHWIRNSSSALYFVAVATAAALSGQHLVRKLIAILGRTSLIIFILALTVFVSGKCNFRRFFWILPFSDQGVYLGFVAMGKEAQYSSQTESTPFKRKYAPHTAIQTKRTKPEYGAPSISFDSIDVKPQCLSAAKNLLKKKSSLEDDHDEEKTALCSPFVCGICFDYKPVSDMLHGKCNHPFCTLCISKHVATQIHQNILKVNCPYPNCHVELEPQFFHAILPAEVVVRWETARCESLLVGLEKTYCPYKDCSVLLVNDGGEVVTSAECPSCHRLFCAQCKVPWHGSMSCQDFQMKTNMDEKELDNKFSSWQKGKIGRNVLSAICLCRDVKDVNILLAGVDATSATVVGRIGVSQTPFILLRRAERLLSRRSVASQSPDRSIRSLPIPRPHLFSTATPKTQNPQLTSPRHEKLQSRRFCCLCLLLLRTDSKTHYLPGITGAALLMNVLPRVGTEPIALVASSSLEQFPSSSLLVRPIFGGRRHRGGGAVGDGETGESDGNDESGGVGERGVVFFVVILFIFFVLLGLVVVVRVLFAENDVVLLLKDRSGNGEAALPRLEEALHVAEENEGGLKN 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00707 731 ProSitePatterns Zinc finger RING-type signature. 335 344 IPR017907 -
Cca01g00707 731 SMART ibrneu5 385 447 IPR002867 -
Cca01g00707 731 Pfam IBR domain, a half RING-finger domain 401 447 IPR002867 -
Cca01g00707 731 Coils Coil 291 311 - -
Cca01g00707 731 ProSiteProfiles TRIAD supradomain profile. 314 604 IPR044066 -
Cca01g00707 731 SUPERFAMILY RING/U-box 397 452 - -
Cca01g00707 731 PANTHER CEREBLON 168 212 - -
Cca01g00707 731 PANTHER CEREBLON 1 104 - -
Cca01g00707 731 MobiDBLite consensus disorder prediction 642 661 - -
Cca01g00707 731 MobiDBLite consensus disorder prediction 551 566 - -
Cca01g00707 731 PANTHER SULFITE EXPORTER TAUE/SAFE FAMILY PROTEIN 168 212 - -
Cca01g00707 731 PANTHER SULFITE EXPORTER TAUE/SAFE FAMILY PROTEIN 1 104 - -
Cca01g00707 731 SUPERFAMILY RING/U-box 315 394 - -
Cca01g00707 731 MobiDBLite consensus disorder prediction 536 567 - -
Cca01g00707 731 ProSiteProfiles Zinc finger RING-type profile. 318 365 IPR001841 -
Cca01g00707 731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 395 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00707 Cca-Chr1 9252852 9266937 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00707 318 451 C3H Transcription Factor Family AT2G19610 26.531 5.59e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00707 K11975 - gmx:102663173 254.218