Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00698 ATGAGGAAAACACCACCCCCCAGTTTGCATCAGTCTAACCAAAGAAAAAAGAATGTTGGTCTCCAAGATAGAGGTGCAGGCAATGGCAAGCATAGGCACAATGCTGAGAACCATACTCCTCTCACAAATTTCAAGTCTTCTTTGAAGAAATTTTTTACATTTTTTTTCTCTGGGAAAAGTAAAACAGCCTCAGAAGCTCCCCAAAGTGATGACAGAAAGAATACACACAAAGTTAGAGGGGTACCATATTTCACAGATGTATCATCTGATAGTTCTAAGAATTCATCAAAAAGGGTGTTTTCTCATTCCTCTGCTTCATCTGGCAATTCAAGTAGTCAGCTTGGAATGGGAAACTTCACCTTTGAGGAAATTTACAAGGCAACAGCAAAGTTCTCCCATGATAAGAAGATTGGGGAAGGTGCTTTTGGAACAGTGTATAAGGGAAAGCTTATTGATGGATCCCTTGTAGCTATAAAGCGTGCCAAGAAGGATTTACAAAACAGGAACTTAGCTGAGTTCAAGAATGAAATAAACACCTTGTCAAGAATTGAGCACAGGAACCTTGTAAGATGGTATGGATATTTGGAGCATGGAGATGAAAAGATTATTGTAGTTGAATATGTTAATAATGGAACTCTTCGGGAACATCTAGATGGTATTAAGGGAGATGGACTAGAAATTGGTGAGCGTCTAGACATAGCAATTGATGTTGCTCATGCAATTACTTACCTTCATATGTACACAGATCATCCAATTATTCATAGGGACATCAAAGCATCAAATATCTTAATCACTGATAAACTACAGGCCAAAGTGGCAGACTTTGGTTTTGCTAGGTTGGGAGCAGAAGATCCAAGTGCAACCCATGTTTCAACTCAAATTAAAGGAACAGCAGGCTACATGGATCCTGATTATATGCGAACACAACAACTCTCTGAAAAGAGTGACGTTTATTCCTTTGGGGTGTTGCTAGTTGAAATGATGACAGGAAGATATCCAGTTGAACCACAGAGACCCCTCAGTGAGAGAGTTACAATTAAGTGGGCAATGCAGATGCTGAAACAAGGAGAGTCTGTGATTGCCATGGATCCAAGACTGAGGAGAAATCCAGCCTCAAACAAGGCAGTGGAGAAGGTTCTCAAGATAGCTTTCCAATGCCTTGCACCGTCGAGACGATCACGGCCATCTATGAAGAGTTGTGCAGAGGTTCTGTGGGATATCCGTAAAGATTTTAAAGAAAAAACATCTTCTCATCCTCCTCGTGGTTCTCACCATTCTGCAGATTTCCCTCGAAGAGATGCTAGGAAGAATAGGCATATGACGTTTGGTATTGAAGATGGTAAAGACTATAAATTTGTATCTTCGTAA 1368 0.4035 MRKTPPPSLHQSNQRKKNVGLQDRGAGNGKHRHNAENHTPLTNFKSSLKKFFTFFFSGKSKTASEAPQSDDRKNTHKVRGVPYFTDVSSDSSKNSSKRVFSHSSASSGNSSSQLGMGNFTFEEIYKATAKFSHDKKIGEGAFGTVYKGKLIDGSLVAIKRAKKDLQNRNLAEFKNEINTLSRIEHRNLVRWYGYLEHGDEKIIVVEYVNNGTLREHLDGIKGDGLEIGERLDIAIDVAHAITYLHMYTDHPIIHRDIKASNILITDKLQAKVADFGFARLGAEDPSATHVSTQIKGTAGYMDPDYMRTQQLSEKSDVYSFGVLLVEMMTGRYPVEPQRPLSERVTIKWAMQMLKQGESVIAMDPRLRRNPASNKAVEKVLKIAFQCLAPSRRSRPSMKSCAEVLWDIRKDFKEKTSSHPPRGSHHSADFPRRDARKNRHMTFGIEDGKDYKFVSS 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00698 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Cca01g00698 455 MobiDBLite consensus disorder prediction 1 42 - -
Cca01g00698 455 MobiDBLite consensus disorder prediction 412 437 - -
Cca01g00698 455 Gene3D Transferase(Phosphotransferase) domain 1 208 425 - -
Cca01g00698 455 ProSitePatterns Protein kinases ATP-binding region signature. 137 163 IPR017441 GO:0005524
Cca01g00698 455 MobiDBLite consensus disorder prediction 65 79 - -
Cca01g00698 455 Coils Coil 163 183 - -
Cca01g00698 455 SMART serkin_6 131 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00698 455 SUPERFAMILY Protein kinase-like (PK-like) 108 406 IPR011009 -
Cca01g00698 455 ProSiteProfiles Protein kinase domain profile. 131 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00698 455 PANTHER OS02G0821400 PROTEIN 1 445 - -
Cca01g00698 455 Gene3D Phosphorylase Kinase; domain 1 89 207 - -
Cca01g00698 455 PANTHER OS01G0253100 PROTEIN 1 445 IPR045271 GO:0004714|GO:0006468
Cca01g00698 455 Pfam Protein tyrosine and serine/threonine kinase 133 404 IPR001245 GO:0004672|GO:0006468
Cca01g00698 455 MobiDBLite consensus disorder prediction 62 112 - -
Cca01g00698 455 MobiDBLite consensus disorder prediction 85 112 - -
Cca01g00698 455 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00698 Cca-Chr1 9186418 9190028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00698 89 407 Receptor kinase-like Gene Family AT1G30570 42.560 2.14e-69 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Cca01g00698 PK_Tyr_Ser-Thr 3.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00698 - - gmx:100819818 728.013