Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00695 ATGGAGGTTTCATGGGAAGAAAGTGTGACATATTCCATAAACGCAGTGTACCTTCTCTTCTCAGCGTACCTCGTTTTTGTAATGCAAATTGGGTTTGCCATGATATGTACAGGCTCCGTACGTGCCAAAAATGCCATGAACATAATGCTCACCAACGTTGTTGATGCAGTTGTTGGTAGCATCTCCTTCTACCTCTTTGGTTTTGCATTTGCATACGGCAATTCCAACCCTTTCATTGGCACTGATTTGTTTGCCCTATCCCATATTCCAAACCAAACTTATGACTACTCTTTCTTCCTTTACCAATGGGCCTTTGCTATAGCCGTCACAGGCATCACAAGTGGCTCCATAGCTGAGAGAACCCAATTCAGTGCCTATCTTGTTTTCTCTTTTTTCCTAAGTGGGTTTGTCTACCCAGTTGTCGTCCATTGGCTTTGGTCATCAAGTGGTTGGCTCAGCCCAAGTTCCAGTGACCTTTTCATGGGCTCAGGGGCCATTGACTTTGCTGGGAGTGGAGTGGTGCATTTGGTTGGTGCAGTTGCTGGGCTTTGGGGGTCCATCATTGAAGGCCCACGGGTCGGCCGATTCGACGCTTTTGGCAAGCCCGTGCCCATACGAGGCCACAGTGCGACACTTGTTGTGCTTGGGACGTTTTTGTTGTGGTTTGGTTGGTTCGGGTTTAACCCTGGCTCCTTTGACAAGATTCTTGTGGCCTACCCTACTACGTCGTCCGAAGGTAACTGGACCTCGGTGGGCCGGACTGCTGTGGTGACCACATTAGCCGGCTCGACGGCTGGAGTGGTCACCTTGTTCGGCCGACGATTGCTGGTCGGCCACTGGGATGCAATGGATGTGTGCAATGGGTTGCTTGGTGGGTTTGTGGCCATCACTTCTGGATGCTCAGTTGTGGAGCCATGGGCTGCCATTCTATGTGGGTTTGTCTCAGCTTGGGTGTTGATTGGGCTCAACATTGTGGCACTAAAGTTGAACTATGATGATCCATTGGAGGCAGCCCAATTGCATGGCGGGTGTGGCACTTGGGGTTTGTTGTTTACTGGGCTTTTTGCCAAAGAGGAGTTTGTGATTCAAGTGTATAATTCAGGTGAGACTGGGGTGGCAAGACCCTATGGGCTCTTACTTGGAGGTGGATGGGGCTTGATTGGAGCCCAAGTGATTGAGATTTTGGCAATATTTGGGTGGGTAAGTGTAACAATGGGCCCTATATTCTATGCCTTGCACAAGCTTGAGATATTGAGAATTCCTGTACAAGAGGAGGTTGCTGGCCTTGATATCTCAAGCCATGGAGGGTATGCTTATGCTCAAGAAGATAACTATCCAAGATCTTATGGAGATTATATGTCTAGTCATCGTGGCCTATCATAG 1383 0.4881 MEVSWEESVTYSINAVYLLFSAYLVFVMQIGFAMICTGSVRAKNAMNIMLTNVVDAVVGSISFYLFGFAFAYGNSNPFIGTDLFALSHIPNQTYDYSFFLYQWAFAIAVTGITSGSIAERTQFSAYLVFSFFLSGFVYPVVVHWLWSSSGWLSPSSSDLFMGSGAIDFAGSGVVHLVGAVAGLWGSIIEGPRVGRFDAFGKPVPIRGHSATLVVLGTFLLWFGWFGFNPGSFDKILVAYPTTSSEGNWTSVGRTAVVTTLAGSTAGVVTLFGRRLLVGHWDAMDVCNGLLGGFVAITSGCSVVEPWAAILCGFVSAWVLIGLNIVALKLNYDDPLEAAQLHGGCGTWGLLFTGLFAKEEFVIQVYNSGETGVARPYGLLLGGGWGLIGAQVIEILAIFGWVSVTMGPIFYALHKLEILRIPVQEEVAGLDISSHGGYAYAQEDNYPRSYGDYMSSHRGLS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00695 460 Pfam Ammonium Transporter Family 17 439 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cca01g00695 460 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 3 1 455 - -
Cca01g00695 460 SUPERFAMILY Ammonium transporter 11 420 - -
Cca01g00695 460 TIGRFAM amt: ammonium transporter 14 439 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cca01g00695 460 PANTHER AMMONIUM TRANSPORTER 1 455 - -
Cca01g00695 460 Gene3D Ammonium transporter AmtB like domains 3 452 IPR029020 -
Cca01g00695 460 ProSitePatterns Ammonium transporters signature. 167 192 IPR018047 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00695 Cca-Chr1 9146188 9147861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00695 7 444 Inorganic Solute Cotransporters AT1G64780 66.292 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00695 K03320 - pvy:116129597 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00695 01 9146188 9147861 Cca01g00695 01 9146188 9147861 ECH