Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00693 ATGGCAGCGTTTAGCTTCGACATGAGTTCCGAGGCGGGGAGAGAGTCGTTTGCGAAGGCCTCGAACGCGGAATGGGTGGAGGAGGACGAAGAGGAGCTTCAGATGGCGGCGCTGCTGCGCCTGCCGACGCGGAAGCGGGTGACGACGGCGTTGATGAGGAAGGAGTCTACGGGCAACAAAGTTGGCGGTGAGATTTTGGAGCAGATTGATGTGACGAAGTTGAGTCGCTTCCACCGCGAACGCCTCGTCAATAATGCTTTGGCCACCAATGAACAAGACAACTACAAGCTCCTTTCTGCCATCAAGGAACGCTTCAACAAGGTTGGATTGGAGGTGCCAAGCATCGAAGTGAGGTACAAAAACTTGACAATTGAAGCTGATGTTCAGATAGGTTCAAGAGCTTTGCCAACTTTGATCAATTACACGCGAGACGCCCTTGAGGGTATGATAACCGGCATAGGAATAGGTCGTCCTCAAAGACATTCCTTGACCATCTTGAATGATATCAGTGGCGTTATCAAACCTGGAAGGATGACATTGCTGTTAGGACCTCCAGGATCAGGCAAAACTACCTTACTTTTGGCTCTTGCAGGAAAGCTTGATGACAACCTCAAGAAAAGTGGTAGTATATCAtacaatggccatgagcaaaacgagttttgtgttcaaagggcttctgcatacactagccaaactgataatcacattgcagaactgacagtgagagaaacttttgattttgccaacagatgtcaaggTTCAAGTGATGCAGAGATTGTGAAAAATCTGGAACTCTTAGAGAAGGAGAAGAACATTCTTCCTAGTCCAGAAATTGATGCGTTTATGAAGGCAACGGCTGTTGGTGGCAAAAGGCACAGTGTGATGACAGATTATGTTTTGAAAGTGCTTGGTCTTGATGTATGTTCAGATACGGTTGTAGGCAATGATATGTTAAGAGGGGTCTCTGGTGGCCAAAAAAGAAGAGTTACAACTGgagaaatgattgttggaccacgaaaagcactatttatggatgaaatatcaactggacttgatagctctaccacattccagattgtgaaatgcataagaaattttgttcatcaaatggaagctactgtgttgattgctctacttcagcctgcaccagaaacatttgagctctttgatgatattgtgcttctgtcggatggacatgtggtataccaaggccccagagaagatgtgctagagttttttgaatcattaggattcaaacttccaccacgcaagggagttgcagattttcttcaagagGTGACCTCTAAAAAAGATCAAGCTCAATACTGGGCTGATCCTTCAAAGCCATATAAATTTATTTCAGTACCAGAGATTGCAGAAGCCTTTAAAAACTCCAAATTTGGAAAGTCTATAGAATCCATGACTATTACTCCCTTTGATAAATCAAAGAGTCATCCTTCAGCTTTGCCCAAAACTAGATTTACTGTGCCAAAATGGGAGCTCTTTAAGGCTTGTTTGTCACGAGAATTGACCTTGCTCAATGGGCATAGGTTTCTCTATATTTTTAGGACCTGCCAGGTTACCTTTGTTGGAGTTGTCACATGCACAATGTTCCTACAAGCAAAATCTCATGCAAAGGATGAGGCTTATGGCAATCTCTACCAATCtgcgctattttttggactggtgcacatgatgttcaatggctattctgagttatcactcatgatagctaggctacctgtcttttacaaacaaagaggcaatttgttttaccctggatgggcgtggtctttgtccacttggattcttggggtaccctactcccttattgaagccgttgtatggacttgtgttgtatactactctgttggatttgcccctgctcctgcaaggtttttccgctacatgcttttgctatttatgcttcaccaaatggcactaggtctcttccggtttatggcttctcttgcacgcgatatggtcattgctaatacatttggaacagctgcattgatgattgtcttcttgctgggaggatttattattccaaaaggtatgattaagccctggtggatttggggttactggttgtcacctcttacctatggacaaagagcaatttcagtcaatgaatttACTGCCACAAGATGGATGCAGCATTCTACTTTCGGGGACGACACAGTTGGTCACAATGTTCTCAATGAATACAACATACCAACTAATGATTACTGGTATTGGATTGGTTTTGGAGTTTTAACACTCTACACTATTCTTTTCAACGTGTTGATTACTTGGGGCTTGAGCTCTCTGAACCCACTCCAAAAGGCACGAGCTGTTATTCTTGGTGATGATGAGGACTCGAAAGAGAGTTCTGACAAAAATGGTAATAGTGATGATGACAGCAAAGCCAAGGGAATGATTCTTCCTTTTGAACCTATGACAATGACATTCCACGCTGTCAATTATTACGTTGACATGCCAAAGgagatagcaaaacaaggaatatcagaaactagattgaagctcttgtcaaatgtgagtggtgtttttgcacctggtgtccttacagctttgatgggatcaagtggtgctggaaaaaccactttgatggatgttcttgctggaaggaaaacaggagggtatattgagggtgatatcaaaatatctggctatccaaaagtgcaacaaacatttgctagaatagcaggatatgttgaacaaaatgacatacattctcctcagctcacggttgaggagtccctgtggttttctgcatcattaaggcttccaaaggaagtgagcatagagaaaaaacaagaatttgttgaacaagtaatgaaactagtggagcttgatagtttaagacatgctttggttggaatgcctggtacttctggcttatcaactgagcagagaaagagactgacaattgctgtggaacttgtagcaaacccttccattattttcatggatgaacctacatctggccttgatgcacgtgcagcagccattgttatgagaacagttcgcaatacagttgatactggtagaacagtggtttgcaccatccatcaaccaagtattgatatatttgaagcatttgatgagTTACTTCTTATGAAACGTGGAGGACGAGTCATATATGGAGGGAAGATTGGTAGGCAATCAGATACAATGATAAAATATTTCCAGAATATTAAAGGAATTTCTCCAATCCCCAGCGGCTACAATCCAGCTACATGGATGCTTGAGGTTACCACACCAGCTATTGAACAGAAACTTGGTGTAGACTTCGCCGAAGTTTACGAAAATTCTGAACAATTCAGGGGGGTGTTATCAAATATTAAGGAAAGTGGACAACCTCCTCCTGGCTCACAACCATTGAAGTTTGACACACTATATTCACAAAACACATGCGCACAATTTGGCAAGtgcttatggaagcaaaatctagtgtactggagaagtccaccctacaatgcaatgaggttattctttacaataatatgtgccttgatatttggtaccatattttgggacatcggtacaaaaagggaaacaactcaacaagtgtatgtaattatgggtgcacttttctctgcatgtcttttccttggagtaaataatgcatcttctgtacaacctgttgtttcaatagaaaggacagtgttttatagagagaaagcagctggaatgtactcaccaatggcatatgcaatggcccaggggctggtggagatcccatacattgccgttcaaacaatagtatttggtctaatcacatattacatggttaattttgaaaggGATATTGgaaagtttttcctctatctactcttcatgttcctaacattcacctacttcaccttttacggcatgatggctgttggaattacacctacacaacactttgcagctgttatttcttctgcattttactctctatggaatcttgtatctggtttccttattccaaaatctcatattcctatatggtggatttggttccattatatctgccctgtttcttggaccctacgtggtattatcacatctcagctcggtgatgtggaacagatgATTGTGGGACCTGGATTTGAGGGCAGTGTTAAAGAGTACATAGCTGTTACTCTTGGATATGACACTACAATTATTGGGATGTCATCAGTGTTGTTGTCAGCAATTGTGCTTATTTGCTTCAACATCCTCTTCTTTGGTTCCTTTGCTATATCCATCAAAGTCTTGAATTTCCAAAAGAGGTGA 4266 0.2126 MAAFSFDMSSEAGRESFAKASNAEWVEEDEEELQMAALLRLPTRKRVTTALMRKESTGNKVGGEILEQIDVTKLSRFHRERLVNNALATNEQDNYKLLSAIKERFNKVGLEVPSIEVRYKNLTIEADVQIGSRALPTLINYTRDALEGMITGIGIGRPQRHSLTILNDISGVIKPGRMTLLLGPPGSGKTTLLLALAGKLDDNLKKSGSISYNGHEQNEFCVQRASAYTSQTDNHIAELTVRETFDFANRCQGSSDAEIVKNLELLEKEKNILPSPEIDAFMKATAVGGKRHSVMTDYVLKVLGLDVCSDTVVGNDMLRGVSGGQKRRVTTGEMIVGPRKALFMDEISTGLDSSTTFQIVKCIRNFVHQMEATVLIALLQPAPETFELFDDIVLLSDGHVVYQGPREDVLEFFESLGFKLPPRKGVADFLQEVTSKKDQAQYWADPSKPYKFISVPEIAEAFKNSKFGKSIESMTITPFDKSKSHPSALPKTRFTVPKWELFKACLSRELTLLNGHRFLYIFRTCQVTFVGVVTCTMFLQAKSHAKDEAYGNLYQSALFFGLVHMMFNGYSELSLMIARLPVFYKQRGNLFYPGWAWSLSTWILGVPYSLIEAVVWTCVVYYSVGFAPAPARFFRYMLLLFMLHQMALGLFRFMASLARDMVIANTFGTAALMIVFLLGGFIIPKGMIKPWWIWGYWLSPLTYGQRAISVNEFTATRWMQHSTFGDDTVGHNVLNEYNIPTNDYWYWIGFGVLTLYTILFNVLITWGLSSLNPLQKARAVILGDDEDSKESSDKNGNSDDDSKAKGMILPFEPMTMTFHAVNYYVDMPKEIAKQGISETRLKLLSNVSGVFAPGVLTALMGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKVQQTFARIAGYVEQNDIHSPQLTVEESLWFSASLRLPKEVSIEKKQEFVEQVMKLVELDSLRHALVGMPGTSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKIGRQSDTMIKYFQNIKGISPIPSGYNPATWMLEVTTPAIEQKLGVDFAEVYENSEQFRGVLSNIKESGQPPPGSQPLKFDTLYSQNTCAQFGKCLWKQNLVYWRSPPYNAMRLFFTIICALIFGTIFWDIGTKRETTQQVYVIMGALFSACLFLGVNNASSVQPVVSIERTVFYREKAAGMYSPMAYAMAQGLVEIPYIAVQTIVFGLITYYMVNFERDIGKFFLYLLFMFLTFTYFTFYGMMAVGITPTQHFAAVISSAFYSLWNLVSGFLIPKSHIPIWWIWFHYICPVSWTLRGIITSQLGDVEQMIVGPGFEGSVKEYIAVTLGYDTTIIGMSSVLLSAIVLICFNILFFGSFAISIKVLNFQKR 1421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00693 1421 Gene3D - 152 451 IPR027417 -
Cca01g00693 1421 Pfam Plant PDR ABC transporter associated 718 781 IPR013581 -
Cca01g00693 1421 CDD ABCG_PDR_domain1 155 404 IPR034001 -
Cca01g00693 1421 MobiDBLite consensus disorder prediction 785 804 - -
Cca01g00693 1421 Pfam ABC-2 type transporter 1142 1354 IPR013525 GO:0016020|GO:0140359
Cca01g00693 1421 Pfam ABC-2 type transporter 501 713 IPR013525 GO:0016020|GO:0140359
Cca01g00693 1421 PANTHER ABC TRANSPORTER G FAMILY MEMBER 31 10 1421 - -
Cca01g00693 1421 Gene3D - 831 1065 IPR027417 -
Cca01g00693 1421 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 150 422 IPR003439 GO:0005524
Cca01g00693 1421 Pfam ABC-2 type transporter 1025 1088 IPR043926 GO:0140359
Cca01g00693 1421 Pfam ABC-2 type transporter 380 430 IPR043926 GO:0140359
Cca01g00693 1421 Pfam ABC transporter 844 996 IPR003439 GO:0005524
Cca01g00693 1421 Pfam ABC transporter 166 347 IPR003439 GO:0005524
Cca01g00693 1421 CDD ABCG_PDR_domain2 813 1051 IPR034003 -
Cca01g00693 1421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 419 IPR027417 -
Cca01g00693 1421 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 826 1068 IPR003439 GO:0005524
Cca01g00693 1421 SMART AAA_5 175 399 IPR003593 -
Cca01g00693 1421 SMART AAA_5 853 1045 IPR003593 -
Cca01g00693 1421 MobiDBLite consensus disorder prediction 785 801 - -
Cca01g00693 1421 PANTHER ATP-BINDING CASSETTE TRANSPORTER 10 1421 - -
Cca01g00693 1421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 841 1051 IPR027417 -
Cca01g00693 1421 Pfam ABC-transporter N-terminal 83 140 IPR029481 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00693 Cca-Chr1 9113950 9130073 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00693 K08711 - gmx:100805373 2486.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00693 01 9113950 9130073 Cca05g01254 05 30109303 30125740 PCT