Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00691 ATGGCACACCATACCATGGAGGAGGACTTGAACATAGCACCACCACCACAGGCACAGAACCTTACATCTTCAATGGTGACAAAAAAGTGGCCATTTCTGGTGACAAAAGGTCGTTTCCAATTGCTTAGGAATTTCAGAGCAAATTTGCAAAAGGTCATTTTTGGTACTAAGCTTGCAGTGCTTTTTCCGGCTGTCCCTTTAGCTGTTGTGGCAGATTTTTATAGCCTCGGAAGGCCTTGGATTTTTGCTTTGAGCTTACTTGGACTCACCCCGCTAGCTGAACGTGTCAGCTTCCTTACTGAGCAAATTGCGTATTACACTGGCCCCACAGTTGGAGGGCTTCTGAATGCAACGTGTGGTAATGCAACCGAGATGATCATTTCTTTGTTAGCACTTTACCAAAACAAAGTAAATGTTGTGAAGTTCTCCCTGCTGGGTTCTATTCTCTCAAACCTTCTACTAGTTCTTGGAAGTTCACTTCTATGTGGAGGCTTAGCCAACCTTAGGAAGGAACAATTATATGATAGGAAACAGGCAGATGTAAACTCACTGCTTTTGTTGCTGGGGTTGCTGTGCCATTTGCTGCCACTAATGTTCAGATATGCCTTAGCAGGGGAATATGCTTCTATTGCCACTTCTACTCTTCAATTGTCAAGAGCAAGCAGCATTGTTATGCTTATTGCATATGCTGCATACATCTTCTTCCAGTTGAAAACGCATCGACAAATTTTTGATGCACAAGAGGAAGATGAAAGTGAAGATGGAGAGAAGGCTGTGATAGGATTTTGGAGTGCATTTACTTGGTTGGTTGGTATGACACTTATCATATCTCTGCTTTCTGAATATATTGTTGCAACCATTGAGGCTGCTTCAGATTCTTGGGGCATTTCTATTAGTTTCATCAGCATAATTTTGTTACCAATTGTGGGGAATGCTGCAGAACATGCTGGCTCAATCATATTTGCTTTTAAGAACAAGTTGGACATATCATTGGGTGTTGCTATGGGATCTGCAACTCAAATTTCTATGTTTGTGGTTCCATTAAGCGTGGTTGTTGCATGGACAATGGGCATAGAAATGGACTTGGATTTCAAGCTCCTTGAAACTGGGTGTCTTGCTTTGACAATTATCGTGACAGCATTCACTTTGCAGGATGGAACTTCACACTACATGAAAGGACTGGTTCTTTTCCTTTGTTACATTATCATATCTGCATGTTTTTTTGTTCAGAAAACTCCACTAATCGATGATGCATAG 1257 0.4153 MAHHTMEEDLNIAPPPQAQNLTSSMVTKKWPFLVTKGRFQLLRNFRANLQKVIFGTKLAVLFPAVPLAVVADFYSLGRPWIFALSLLGLTPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIISLLALYQNKVNVVKFSLLGSILSNLLLVLGSSLLCGGLANLRKEQLYDRKQADVNSLLLLLGLLCHLLPLMFRYALAGEYASIATSTLQLSRASSIVMLIAYAAYIFFQLKTHRQIFDAQEEDESEDGEKAVIGFWSAFTWLVGMTLIISLLSEYIVATIEAASDSWGISISFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVAMGSATQISMFVVPLSVVVAWTMGIEMDLDFKLLETGCLALTIIVTAFTLQDGTSHYMKGLVLFLCYIIISACFFVQKTPLIDDA 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00691 418 TIGRFAM cax: calcium/proton exchanger 63 408 IPR004798 GO:0006816|GO:0015369
Cca01g00691 418 Pfam Sodium/calcium exchanger protein 265 404 IPR004837 GO:0016021|GO:0055085
Cca01g00691 418 Pfam Sodium/calcium exchanger protein 80 237 IPR004837 GO:0016021|GO:0055085
Cca01g00691 418 PANTHER VACUOLAR CATION/PROTON EXCHANGER 17 416 - -
Cca01g00691 418 TIGRFAM caca2: calcium/proton exchanger 45 408 - -
Cca01g00691 418 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 17 416 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cca01g00691 418 Gene3D - 256 409 IPR044880 -
Cca01g00691 418 Gene3D - 109 251 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00691 Cca-Chr1 9103580 9109529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00691 18 413 Antiporters AT2G38170 68.983 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00691 K07300 - gmx:100778821 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00691 01 9103580 9109529 Cca01g00691 01 9103580 9109529 ECH
Cca01g00691 01 9103580 9109529 Cca05g01255 05 30126647 30130558 PCT