Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00688 ATGGATCCTCTTATGAACTCTTATGTTGAGAGAATGCAAGCTACAACTAGGATATTGATgtggaaaatcggttctggtaaaagcatatctatttggaacgagccttggatCCTGCACAACCAAACCTATATCAAATCTCCTAGTTGCACCAATGACGTGTACAAGCACCTTCACGTTAGTGACCTCATCTCTTCCGATACCCTCGAATGGAATCACAACATCATTCATCATATTTTTGACGAAGCCACAACTAAAGACATCCTAGCCACTCCCGTTTACAGCCACTGCACAGATGACTCTTACGTGTGGAAATGGTCCAATGATGGATGCTTCACGGTCAGGTCTGCGTATAAAGCCATAACAAGCTCTCTCCTCCCAACTAATACTATGGACCCCGACAAAACTTGGAACATCATTTGGAGTCTTCCTATTCCTGCGAAAGTGAAACATCACACATGGAGAGTCTATAAAAATATCCTTCCTACCCGTGCCCAGCTTCAAAAGAAAGGTGTGAGCTGCCCCATCAGTTGCCCAAGATGTGATGTTGGTATCGAGAGTTCTTGGCATGCGCTGTTTGGATGTTATGATGCGAGAATTTGTTGGTTGGCTAGTAACCTAAAGGATAAGATGAGCTCCAACATTGATCAAGCTAATGGTACTTCTGATCTTGTGAACAAAATCCTTAATCTTTGGTCCAAATCTGATGCGGCTGACTTTTGCATGATGATGTGGAGTATCTGGACTAGCAGGAATAATCTCTTATGGAAAGATATGCCTTGGAATACATTGGAAGTTGTCCACCGTGCCCGTAACTCCAGACAAAATTGGACTTTGGCTAACCAGCGGCCTCTTGATGCTAGAGGTATTCCTGGTCCCACCCCGACTACCCAATGGTCTCCCCCACCCCATGGTTCATACAAGTGCAATTTTGCTACATTCCCTAACCCTGATGAGAATACATTTGGAATCGGTCTCTGCATTAGAGACAGCTTGGGTTCCTTTGTGGGTGCACGTACCCTCAAGATCCCTGGTCTTCCTCCTGCCAGTATTAGAGATGCTATTGCTCTCATGCAAGCCATCATTTTGGCTTCGGAAAATCAATATTCGCCCATCCTCTTCGAGTCCAGTAGTAGCAGAATTGAAAATTTTCTCCTTCATCCCAACCTGAAGGATAGAActgaatttagtgacattatgaaccattgtagaaataagataagttcttgtgccaactttaatTGTCGTAGTTGTAGCGGCGAAACTGAGATCATAGAGAGAACCAAGCAGGAGATGGCCAAAACGACGTCGTTGCTGCTCTGTACACTGCTCCTCTTCGGAACCCTGGCTCTCATCCAGGCGAAGAAATCGTCGGAGGATTTGAAGGAGGTGACTAACAAGGTTTACTTTGATGTTGAGATTGATGGAAAAGCTGCAGGTCGTATTGTGATCGGTCTTTTTGGGAAGACAGTTCCAAAAACTGCAGAAAACTTCCGAGCTCTTTGCACAGGCGAAAAGGGAACTGGTAAAAGCGGAAAGCCTCTTCATTACAAAGGTAGCTCATTCCATAGAATTATTCCTAGCTTTATGATCCAAGGAGGTGATTTTACGCATGGCAATGGAATGGGTGGAGAATCAATTTACGGAGAGAAGTTTGCTGATGAGAACTTCAAGATAAAGCATACTGGACCAGGACTTCTATCAATGGCAAACGCTGGTCCTGATACCAATGGTTCACAATTTTTCATTACAACTGTGACAACTAACTGGTTGGATGGAAGGCATGTTGTTTTTGGTAAAGTTCTTTCCGGTATGGATGTTGTTTACAAGATTGAAGCTGAGGGAAGGCAAAGTGGTACTCCCAAGAGCAAGGTTGTGATTGCTGACAGTGGTGAACTCCCTCTATAA 1905 0.4184 MDPLMNSYVERMQATTRILMWKIGSGKSISIWNEPWILHNQTYIKSPSCTNDVYKHLHVSDLISSDTLEWNHNIIHHIFDEATTKDILATPVYSHCTDDSYVWKWSNDGCFTVRSAYKAITSSLLPTNTMDPDKTWNIIWSLPIPAKVKHHTWRVYKNILPTRAQLQKKGVSCPISCPRCDVGIESSWHALFGCYDARICWLASNLKDKMSSNIDQANGTSDLVNKILNLWSKSDAADFCMMMWSIWTSRNNLLWKDMPWNTLEVVHRARNSRQNWTLANQRPLDARGIPGPTPTTQWSPPPHGSYKCNFATFPNPDENTFGIGLCIRDSLGSFVGARTLKIPGLPPASIRDAIALMQAIILASENQYSPILFESSSSRIENFLLHPNLKDRTEFSDIMNHCRNKISSCANFNCRSCSGETEIIERTKQEMAKTTSLLLCTLLLFGTLALIQAKKSSEDLKEVTNKVYFDVEIDGKAAGRIVIGLFGKTVPKTAENFRALCTGEKGTGKSGKPLHYKGSSFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKIKHTGPGLLSMANAGPDTNGSQFFITTVTTNWLDGRHVVFGKVLSGMDVVYKIEAEGRQSGTPKSKVVIADSGELPL 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00688 634 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 469 628 IPR002130 GO:0000413|GO:0003755
Cca01g00688 634 SUPERFAMILY Cyclophilin-like 463 632 IPR029000 -
Cca01g00688 634 Gene3D - 453 633 IPR029000 -
Cca01g00688 634 CDD cyclophilin_ABH_like 466 630 - -
Cca01g00688 634 Pfam zinc-binding in reverse transcriptase 111 201 IPR026960 -
Cca01g00688 634 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 564 579 IPR002130 GO:0000413|GO:0003755
Cca01g00688 634 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 592 607 IPR002130 GO:0000413|GO:0003755
Cca01g00688 634 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 485 500 IPR002130 GO:0000413|GO:0003755
Cca01g00688 634 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 521 533 IPR002130 GO:0000413|GO:0003755
Cca01g00688 634 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 579 591 IPR002130 GO:0000413|GO:0003755
Cca01g00688 634 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-1 442 634 - -
Cca01g00688 634 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 516 533 IPR020892 GO:0003755|GO:0006457
Cca01g00688 634 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 468 631 IPR002130 GO:0000413|GO:0003755
Cca01g00688 634 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 442 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00688 Cca-Chr1 9059541 9067046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00688 479 611 U-box Gene Family AT5G67530 46.269 1.74e-25 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00688 K01802 - ccaj:109815628 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00688 01 9059541 9067046 Cca01g00688 01 9059541 9067046 ECH