LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca01g00688	ATGGATCCTCTTATGAACTCTTATGTTGAGAGAATGCAAGCTACAACTAGGATATTGATgtggaaaatcggttctggtaaaagcatatctatttggaacgagccttggatCCTGCACAACCAAACCTATATCAAATCTCCTAGTTGCACCAATGACGTGTACAAGCACCTTCACGTTAGTGACCTCATCTCTTCCGATACCCTCGAATGGAATCACAACATCATTCATCATATTTTTGACGAAGCCACAACTAAAGACATCCTAGCCACTCCCGTTTACAGCCACTGCACAGATGACTCTTACGTGTGGAAATGGTCCAATGATGGATGCTTCACGGTCAGGTCTGCGTATAAAGCCATAACAAGCTCTCTCCTCCCAACTAATACTATGGACCCCGACAAAACTTGGAACATCATTTGGAGTCTTCCTATTCCTGCGAAAGTGAAACATCACACATGGAGAGTCTATAAAAATATCCTTCCTACCCGTGCCCAGCTTCAAAAGAAAGGTGTGAGCTGCCCCATCAGTTGCCCAAGATGTGATGTTGGTATCGAGAGTTCTTGGCATGCGCTGTTTGGATGTTATGATGCGAGAATTTGTTGGTTGGCTAGTAACCTAAAGGATAAGATGAGCTCCAACATTGATCAAGCTAATGGTACTTCTGATCTTGTGAACAAAATCCTTAATCTTTGGTCCAAATCTGATGCGGCTGACTTTTGCATGATGATGTGGAGTATCTGGACTAGCAGGAATAATCTCTTATGGAAAGATATGCCTTGGAATACATTGGAAGTTGTCCACCGTGCCCGTAACTCCAGACAAAATTGGACTTTGGCTAACCAGCGGCCTCTTGATGCTAGAGGTATTCCTGGTCCCACCCCGACTACCCAATGGTCTCCCCCACCCCATGGTTCATACAAGTGCAATTTTGCTACATTCCCTAACCCTGATGAGAATACATTTGGAATCGGTCTCTGCATTAGAGACAGCTTGGGTTCCTTTGTGGGTGCACGTACCCTCAAGATCCCTGGTCTTCCTCCTGCCAGTATTAGAGATGCTATTGCTCTCATGCAAGCCATCATTTTGGCTTCGGAAAATCAATATTCGCCCATCCTCTTCGAGTCCAGTAGTAGCAGAATTGAAAATTTTCTCCTTCATCCCAACCTGAAGGATAGAActgaatttagtgacattatgaaccattgtagaaataagataagttcttgtgccaactttaatTGTCGTAGTTGTAGCGGCGAAACTGAGATCATAGAGAGAACCAAGCAGGAGATGGCCAAAACGACGTCGTTGCTGCTCTGTACACTGCTCCTCTTCGGAACCCTGGCTCTCATCCAGGCGAAGAAATCGTCGGAGGATTTGAAGGAGGTGACTAACAAGGTTTACTTTGATGTTGAGATTGATGGAAAAGCTGCAGGTCGTATTGTGATCGGTCTTTTTGGGAAGACAGTTCCAAAAACTGCAGAAAACTTCCGAGCTCTTTGCACAGGCGAAAAGGGAACTGGTAAAAGCGGAAAGCCTCTTCATTACAAAGGTAGCTCATTCCATAGAATTATTCCTAGCTTTATGATCCAAGGAGGTGATTTTACGCATGGCAATGGAATGGGTGGAGAATCAATTTACGGAGAGAAGTTTGCTGATGAGAACTTCAAGATAAAGCATACTGGACCAGGACTTCTATCAATGGCAAACGCTGGTCCTGATACCAATGGTTCACAATTTTTCATTACAACTGTGACAACTAACTGGTTGGATGGAAGGCATGTTGTTTTTGGTAAAGTTCTTTCCGGTATGGATGTTGTTTACAAGATTGAAGCTGAGGGAAGGCAAAGTGGTACTCCCAAGAGCAAGGTTGTGATTGCTGACAGTGGTGAACTCCCTCTATAA	1905	0.4184	MDPLMNSYVERMQATTRILMWKIGSGKSISIWNEPWILHNQTYIKSPSCTNDVYKHLHVSDLISSDTLEWNHNIIHHIFDEATTKDILATPVYSHCTDDSYVWKWSNDGCFTVRSAYKAITSSLLPTNTMDPDKTWNIIWSLPIPAKVKHHTWRVYKNILPTRAQLQKKGVSCPISCPRCDVGIESSWHALFGCYDARICWLASNLKDKMSSNIDQANGTSDLVNKILNLWSKSDAADFCMMMWSIWTSRNNLLWKDMPWNTLEVVHRARNSRQNWTLANQRPLDARGIPGPTPTTQWSPPPHGSYKCNFATFPNPDENTFGIGLCIRDSLGSFVGARTLKIPGLPPASIRDAIALMQAIILASENQYSPILFESSSSRIENFLLHPNLKDRTEFSDIMNHCRNKISSCANFNCRSCSGETEIIERTKQEMAKTTSLLLCTLLLFGTLALIQAKKSSEDLKEVTNKVYFDVEIDGKAAGRIVIGLFGKTVPKTAENFRALCTGEKGTGKSGKPLHYKGSSFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKIKHTGPGLLSMANAGPDTNGSQFFITTVTTNWLDGRHVVFGKVLSGMDVVYKIEAEGRQSGTPKSKVVIADSGELPL	634

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca01g00688	634	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	469	628	IPR002130	GO:0000413\|GO:0003755
Cca01g00688	634	SUPERFAMILY	Cyclophilin-like	463	632	IPR029000	-
Cca01g00688	634	Gene3D	-	453	633	IPR029000	-
Cca01g00688	634	CDD	cyclophilin_ABH_like	466	630	-	-
Cca01g00688	634	Pfam	zinc-binding in reverse transcriptase	111	201	IPR026960	-
Cca01g00688	634	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	564	579	IPR002130	GO:0000413\|GO:0003755
Cca01g00688	634	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	592	607	IPR002130	GO:0000413\|GO:0003755
Cca01g00688	634	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	485	500	IPR002130	GO:0000413\|GO:0003755
Cca01g00688	634	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	521	533	IPR002130	GO:0000413\|GO:0003755
Cca01g00688	634	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	579	591	IPR002130	GO:0000413\|GO:0003755

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca01g00688	Cca-Chr1	9059541	9067046	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca01g00688	479	611	U-box Gene Family	AT5G67530	46.269	1.74e-25	109

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca01g00688	K01802		-	ccaj:109815628	511.916

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca01g00688	01	9059541	9067046	Cca01g00688	01	9059541	9067046	ECH

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