Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00682 ATGCCGACGCCGGTAAGCACCGCGAGGCAATGCCTGACAGAGGAGGCGGCGCGTGCCCTCGACGACGCCGTGAGCGTGGCCCGGCGGCGCAGCCACGCCCAGACCACCTCCCTCCACGCCGTCTCCGCCCTCCTCTCCCTCCCCTCCGCCTCCCTCCGCGCCGCCTGCTCCCGGTGCCGCAGCTGCTCATACTCCCCGCGCCTCCAGTTCCGCGCCCTCGAACTCTCCGTCGGCGTCTCCCTGGACCGCCTCCCCACCACGAAATCCTCCGCCGCGGGCGACGGCATCGAGGAGGGTCCTCCGGTCTCAAACTCCCTGATGGCCGCCATAAAACGGTCCCAGGCGAACCAGCGGCGGCACCCCGACAGCTTCCACCTGATGCAGATGATTCAGCAGAACCAGAATCATCAAAGCACTTCTTCCCTCCTCAAAGTGGAACTCAAACACTTCATTCTCTCCATCCTCGACGACCCCATCGTAAGCCGCGTCTTCGCCGAAGCCGGTTTCCGAAGCTACGACATCAAGCTCGCCCTCCTCCAACCTCCCCCACCTTCCAGAATCTTCCCTCGCCTCGCCCCGCCCCTCTTCCTCTGCAACCTCGAACCGCTTCAAGCCGCCGCCTCCAGCCCCACCCTCGACCCCAATTCCCGCAGAATCCTCGAGGTCATCACCAGAAAGACCAAAAGGAACCCCCTTTTGATGGGGGTCTTCGCCAAACCCGCTCTCAACACTTTCCTAGAATGCGTCAAAACCGGTAAAGCTGGCCTTTTTTCCGATGAACTCGCCGGGCTCACCGCCGTCTCCGTCGAGAGGGAGGTTTCTGAGCTCGTGAGGCACGGTGCCGGCAAGGGGAACGTTTTCGAGGAATTGGGTCGGTTGGTGGAGCAGTGTTCCGGTGCTGGTGTTGTTGTGTGTTTCGGTGAGGTCGAGGTTTTTGTTGGGGATGTGGGGAATGAGGAGGGTGTTGGGTTCGTTGTTTCGCAGTTGACGAGGTTGTTGGGGGTTCATGGTGGGAAGGTTTGGTTGGTGGGTGTGGCGGGAACCTCTGAGGCTTATTCTAAGTTCCTCAGGTTGTTCCCTACTGTTGACAAGGATTGGGATCTGCATCTCCTGACCATGACCTCTGCCATCCCTTCCATCGAAGGACTCTACCCTAAGTCCAGCTTGATGGGGTCCTTTGTGCCATTTGGAGGGTTCTTTTCTACGCCATCTGAGTTCAAAAATCCCTCGAGTTGTATGAATGCTTCATCATCTTTAACTCGGTGTGACACATGCAATGAAAAGTATGAAGAAGAAGTTGCTGATATTTTGAAGGTAGGCCATGCTACTTCGGCATCAACGAGCTTGCCTTGGTTACAAAAGGTTAATGTGGACACAGATAGAGGATTGGAGGTGGCAAAGACTAATGAAGAAAATACAAGTTTGAACACAAAGATCTTCGGATTGCAAAGAAAATGGAGTGATATCTGTCATCGTCTTCACCAAAACCGATCATTACCCGAATTTGATATCACCAAAACAAGATTCCAAATTCCTTCCCATGAAGGGTTTCAATTTGGTCCAGGAAGCAGCAGCAAAGGTCCACCTCACAGTGAACCCCAATATTCTAATCAAATTTCCTACATGTCTAAAGAGTCACAAAGTGCATTTCCATTTAGACAGATATTACCAGTTTCAGCACCTTTTGACAGCGTTAATATCACTGATGAAGCAGACCACATACCAAATGTTTCAAAGAGTGACATGCAGAATACTTGGATTTCTCCTTCTCATAAGGCCAATATGGGCCCTCTTGATCACAAATCATCTTCATCCCTCACTCCTGTGACCACAGATTTGGGATTGGGAACAATATATACATCAGCTGCTCATGAGCCAGAAACTCCAAAACTAAGTGATCATAAGAAGCATCTTCAGCACTTGTCAGACTCCCTTTCAACTGATTTTGATGCTTTGAATGAGAATACTTCACACCAAATTGCTAGATCTTCTTCCTGCTCTGGTCCAAATCTGGAAGGGAAATTTGAAGCAGTAGATTTCAAGTCACTTTACCATCTTCTCTCTGAAAAGGTTGGCTGGCAGGATGAGGCCATATATGCTATCAATCGAACCGTGTCGCGTTGTAGATCCGGTGCTGGCAAGCGTAACGGCTCACATGTTAGAGCTGACATATGGCTTGCATTCCTTGGACCAGATAGACTTGGAAAAAGGAAACTTGCTTCAGCACTTGCTGAGGCTTTGTTTGGAAACAAACAAAGCCTAATCACAGTGGATTTGAGATTACAAGATAGGTGTTATCCAGCAGACTCGATTTTTGAGTTCCAAAATTCACATTGTCATGATGTTCTTATGAGGAAGACAGTTGTGGACTATGTTGCTGGTGAGTTGAGTAAAAAGCCACATTCAGTTGTCTTTCTTGAAAATGTAGATCAAGCTGATTTCCTTGTGCAGAATAGTTTGTTCCAAGCAATAAGAACAGGTAGTGCCACTTTCGATTTGGAGGAGGAGCCTAAAATGTTTCCTGAGGAAAGAATCCTAGAAGCCAAAAGATGTCAAATGCAATTATCACTTGGACATGCTTCTGAGGATGCCAAAAGGAGTGGTTGCACAAATGTGAAAGTTGCACATAGAAAAGGGACAACGAAAACATTTCTAAATAAAAGAAAGCTAATAGAAAGTGGTGGTTCCAAAGAGAAAGCATCATGCAAGACACTGAAACAGGTCAAGGAGGCATCAAGGTCCTATCTGGATCTGAATATGCCTTTGGAGGAAGTTGAAGAGGGAAACAATTACAATGATTATGAAAGTGAATCAACAGTTGAAGACTCTGGGGCCTGGCTACATGATTTGTGTGATCAAATTGATGAAAAAGTTGTCTTTAAGCCATTCAATTTTGATTCTCTTGCTGAGAAAGTAATAAAAAGCATTGACATACAATTTCAAAAGATGTTTGGACCAGAGTTTGTGCTGGAAATTGAGTATGAGGTCATGGCACAGATACTTGCAGCTGCTTGGTTATCAGACAAGAAAAAGGCAGTGGAGGATTGGGTTGAACTTGTTCTTGGCAGAAGCTTTGCTGAAGCTCAACAGAAGTACAACTTTGCACATGAATATGTGATGAAACTGGAACTTTGGTGCTGTTTCTTGGCTTGTTTAAGATTCTGTAAAATAATGTGCAGTGGTTCCAAGAAGAGGCCTTCTCAAACCGGTTCAATTATGGGGGATGAAGGGTTGCATCATAAGATTTCTGCTTTGCTCGAATTTTCAGCAGCAGATGATGTAATGGCTTTCAAAGATGCTGTTGAGAAAGAGGGTCTTGATGTTGATGAGGTGGGGTTGTGGTATGGAAGGAGGGTTGGCTCAAAGGAATTGGGTTTTGAAGAGAGGACCCCTCTTATGATTGCTGCTATGTTTGGAAGCAAAAGGGTGTTGTCTTATATTCTTGGGACGGGATGCGTTGATGTTAATCGGGCCTGTGGATCAGATGGGGCTACTGCCCTTCATTGTGCTGTTGATGGAGGTTCTGCTGCCTCCCTTGAAGTCATCAAGCTTTTGCTCGCTGCGTCGGCTGATGTTAGTTCTGTTGATGCCAATGGAAACAGTTGCTGTGACTTGGTTGTCTCTGTGACCAACGGTGTTTTCAATTCGAGAAAGAGGATATTACAAGCCATACTAGAAGGAGCAATTAGTATTGATGAGGCTTGCCTTAAATTTGAGGAAGCAGACCAAATGGAGAAGGAGCATCAGCAAGATGTAGAAGCATTTCAGATTCCAAAAAATGGGAATGGGAAGAAAGATTATCCTGTTGATCTCTCTCTCCCAGACATCAAAAATGGAATCTATAGCACAGATGAGTTTAGGATGTACACATTCAAAGTGAGGCCTTGTTCAAGAGCTTATTCTCATGATTGGACTGAGTGTCCCTTTGTTCATCCTGGAGAAAATGCAAGGCGCCGCGATCCTATGAAATACCAATACAGCTGTGTCCCTTGCCCCGAGTTTCGGAAGGGGTCCTGCAGCAAGGGGGATGACTGTGAATACGCGCATGGTATCTTCGAGTGCTGGCTCCACCCTGCGCAATACAGGACACGCCTTTGCAATGAGACAGGATGCACCAGAAGAGTTTGCTTCTTTGCTCATAAGCTGGAGGAGCTTCGGCCGGTGTATGCTTCCACCGGTTCTGCTTTGCCTTCTCCCAGATCATATTCTGCTAGTGCTCCTTCATTGGACCCATTCACACTGGGCTCTCCATCTGCCTTAACCCCGCCAATGACTCCGTCTGGAGGATCTCCTCCTGTGGGTGGAACCATGTGGCACACTCAGTCTCAGGTTCCAGTCCCTACCCTTCCGCTCTCCCAAAGCAGATTGAAAACTGCACAAAATGCTAGAGATGTTGAACTAGACTTTGAATTGCTTGGACTTGAAGATCATGGATTCATTATGCATCCTAACTGGGAAAATTCCATGCCTAATAGTCCATCTTTCCGCCATCATAATGGGGAGTTAAATAGGCTTGTAGGAGTGAAGCCTTTCAACCTTGAAGACATTTTCGGGTCTCAGATGCAATCTCCAACCGGAACTCAAGTGCATCAGAATGCGAACCAGCAATTGCGGGGCTATCCTTCAAGTGTGATTGGATCGCCTTCATTCAGGGTTGATCAATCTGGAACAGCTGCCACAATGACTTCGAATCCAAGAAATGGTGCTTTATCAAGCCAAAATTTTATGGAGCATAATATGGTGAACTGTGATTCTGAGTTTCCTTCTCGTGATACTCGTATCGCAGTTGAGTCTTCTTCCTTCTTTGGTTGGAATTCTACTGATGGCAGCAAGTTAGATTGGACCATGCGCGGAGATGAACTAAAGAAGCCAAACAAATCTTCTTCTTTTGGATTTTGA 4899 0.4727 MPTPVSTARQCLTEEAARALDDAVSVARRRSHAQTTSLHAVSALLSLPSASLRAACSRCRSCSYSPRLQFRALELSVGVSLDRLPTTKSSAAGDGIEEGPPVSNSLMAAIKRSQANQRRHPDSFHLMQMIQQNQNHQSTSSLLKVELKHFILSILDDPIVSRVFAEAGFRSYDIKLALLQPPPPSRIFPRLAPPLFLCNLEPLQAAASSPTLDPNSRRILEVITRKTKRNPLLMGVFAKPALNTFLECVKTGKAGLFSDELAGLTAVSVEREVSELVRHGAGKGNVFEELGRLVEQCSGAGVVVCFGEVEVFVGDVGNEEGVGFVVSQLTRLLGVHGGKVWLVGVAGTSEAYSKFLRLFPTVDKDWDLHLLTMTSAIPSIEGLYPKSSLMGSFVPFGGFFSTPSEFKNPSSCMNASSSLTRCDTCNEKYEEEVADILKVGHATSASTSLPWLQKVNVDTDRGLEVAKTNEENTSLNTKIFGLQRKWSDICHRLHQNRSLPEFDITKTRFQIPSHEGFQFGPGSSSKGPPHSEPQYSNQISYMSKESQSAFPFRQILPVSAPFDSVNITDEADHIPNVSKSDMQNTWISPSHKANMGPLDHKSSSSLTPVTTDLGLGTIYTSAAHEPETPKLSDHKKHLQHLSDSLSTDFDALNENTSHQIARSSSCSGPNLEGKFEAVDFKSLYHLLSEKVGWQDEAIYAINRTVSRCRSGAGKRNGSHVRADIWLAFLGPDRLGKRKLASALAEALFGNKQSLITVDLRLQDRCYPADSIFEFQNSHCHDVLMRKTVVDYVAGELSKKPHSVVFLENVDQADFLVQNSLFQAIRTGSATFDLEEEPKMFPEERILEAKRCQMQLSLGHASEDAKRSGCTNVKVAHRKGTTKTFLNKRKLIESGGSKEKASCKTLKQVKEASRSYLDLNMPLEEVEEGNNYNDYESESTVEDSGAWLHDLCDQIDEKVVFKPFNFDSLAEKVIKSIDIQFQKMFGPEFVLEIEYEVMAQILAAAWLSDKKKAVEDWVELVLGRSFAEAQQKYNFAHEYVMKLELWCCFLACLRFCKIMCSGSKKRPSQTGSIMGDEGLHHKISALLEFSAADDVMAFKDAVEKEGLDVDEVGLWYGRRVGSKELGFEERTPLMIAAMFGSKRVLSYILGTGCVDVNRACGSDGATALHCAVDGGSAASLEVIKLLLAASADVSSVDANGNSCCDLVVSVTNGVFNSRKRILQAILEGAISIDEACLKFEEADQMEKEHQQDVEAFQIPKNGNGKKDYPVDLSLPDIKNGIYSTDEFRMYTFKVRPCSRAYSHDWTECPFVHPGENARRRDPMKYQYSCVPCPEFRKGSCSKGDDCEYAHGIFECWLHPAQYRTRLCNETGCTRRVCFFAHKLEELRPVYASTGSALPSPRSYSASAPSLDPFTLGSPSALTPPMTPSGGSPPVGGTMWHTQSQVPVPTLPLSQSRLKTAQNARDVELDFELLGLEDHGFIMHPNWENSMPNSPSFRHHNGELNRLVGVKPFNLEDIFGSQMQSPTGTQVHQNANQQLRGYPSSVIGSPSFRVDQSGTAATMTSNPRNGALSSQNFMEHNMVNCDSEFPSRDTRIAVESSSFFGWNSTDGSKLDWTMRGDELKKPNKSSSFGF 1632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00682 1632 Gene3D - 1079 1224 IPR036770 -
Cca01g00682 1632 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 827 - -
Cca01g00682 1632 ProSiteProfiles Clp repeat (R) domain profile. 8 184 IPR004176 -
Cca01g00682 1632 ProSiteProfiles Ankyrin repeat profile. 1162 1197 IPR002110 GO:0005515
Cca01g00682 1632 MobiDBLite consensus disorder prediction 513 536 - -
Cca01g00682 1632 Pfam Ankyrin repeats (3 copies) 1123 1194 IPR002110 GO:0005515
Cca01g00682 1632 SMART c3hfinal6 1325 1351 IPR000571 GO:0046872
Cca01g00682 1632 SMART c3hfinal6 1360 1382 IPR000571 GO:0046872
Cca01g00682 1632 SUPERFAMILY Double Clp-N motif 12 129 IPR036628 -
Cca01g00682 1632 Gene3D - 10 180 IPR036628 -
Cca01g00682 1632 Gene3D - 656 887 IPR027417 -
Cca01g00682 1632 ProSiteProfiles Ankyrin repeat region circular profile. 1162 1196 - -
Cca01g00682 1632 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 828 1043 - -
Cca01g00682 1632 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 827 - -
Cca01g00682 1632 SMART ANK_2a 1127 1157 IPR002110 GO:0005515
Cca01g00682 1632 SMART ANK_2a 1162 1194 IPR002110 GO:0005515
Cca01g00682 1632 SMART ANK_2a 1198 1233 IPR002110 GO:0005515
Cca01g00682 1632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 675 831 IPR027417 -
Cca01g00682 1632 MobiDBLite consensus disorder prediction 517 536 - -
Cca01g00682 1632 ProSiteProfiles Zinc finger C3H1-type profile. 1325 1352 IPR000571 GO:0046872
Cca01g00682 1632 SUPERFAMILY Ankyrin repeat 1099 1208 IPR036770 -
Cca01g00682 1632 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 828 1043 - -
Cca01g00682 1632 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 1330 1350 IPR000571 GO:0046872
Cca01g00682 1632 Gene3D - 1323 1387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00682 Cca-Chr1 8956210 8969622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00682 1080 1631 C2H2 Transcription Factor Family AT5G12850 40.859 9.61e-128 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca01g00682 Ank_2 4.7e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00682 - - gmx:100776148 1597.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00682 01 8956210 8969622 Cca01g00682 01 8956210 8969622 ECH
Cca05g01260 05 30238802 30244399 Cca01g00682 01 8956210 8969622 ECH
Cca02g00623 02 13878581 13882854 Cca01g00682 01 8956210 8969622 ECH
Cca01g00682 01 8956210 8969622 Cca05g01260 05 30238802 30244399 PCT