Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00679 ATGTCCATCCACTACTCCCCGTCCCCGTCCCCGCCGCCCGCCCTCCACTCCATCCGCCGCTCCCTCTCCGACATCTCCTCCCCGCCGCCGGACCACCGTCCCTTCGACGCCCCCCGCCGCTTCGCCGCCTTCGCCCACCGCCTCTCCCACCTCCTCCTCCTCCTCCTGCCGCCCCCGCACTCCCCGCCCCTCCACACCGCCCTCAAGGGGCTCGCCGCCGAGCTCTCCAAGGCCGCCGAAACTGTCTCTGTCTACAACAACGGCAGCAAGATTCTCGTCCTCGTCAACTGCAAAACCCTCTCCTCCGCCCTCCAACAACGCGCCACCGCCCTCGCCGCCTGGCTCACCCTCCTGGCCTCCGCCCTCCCCGACGCCGGCGACGACGAGCTCCGCAAGAAGGCCTCCGACCTCTCCCGGGACATGAAGCTCGCACAGTTCAAAGTCACAGAGAACGAAGAGAGGGTTCGGTGTACCCTGGAAAAGGAAGGGGAAGGGAGAGAGAGCAGCAAAGCTGTGCAGAGTGGCATTGTCATGGATTTGGCTCGTGCTTTGGGGTTTGACCCTGGTGATCGCGCTGAGTTTTGTAACCAAGTCAAGCTCTTCAAGAATGATCCTTTCAGATCCCATTCTGTGCCCGAGAGAAGGGTCTTGATGTCCTTGGAGAGGATTCTTAGTAACTGGTCTGTGGAGCCAGTCACTGTGACCCCCAATTGGGACTTTGAAATTGTTGATGATGCCGCTGCTCCTGTTTTTGCGTTCAAGAGTTTCCTCTGCCCCTTGACCAAGGAAGTCATGAGGGACCCTGTGGTTGTGCTGGAGTCTTCTCAGGCGTATGAGAGGACTGCTATTGAGTACTGGTTTGAACGCTGCATCCAGGACGGCCGTGAGCCCACTTGTCCAATCACCGGCACGGTTCTTAAGTCCTTGGAGCTTAAGCCCAACATTGGTTTGGCTGGGGCAATTGAAGAGTGGGTTGGCAGGGTTGTTGAGTATCAAATCAAATCTGCAGTGCAGTATCTGAGTGAGGAACCCTTGTCTGTTGATCATGTTGAGCGTGCTCTGGATCATGTTTATAAGGTTTCTGAAGAGCACCCCACTAGAAGATACATAATCAGGAATGCTGGTGTTGTGCTGTTGATAGTGACTGTGCTCAGTAATAACTCTAAAACTATTGGATCACATTTGAGAAGCAAAGCTCTAATGACCTTACTTAGCATAGCCAAGGATGAAGAAAGCAGGAAAATAATGCTTGAACGGGGTATCACTAGATTGGCCGTACATAGTCTTATTGGGAGCTCTGAGAAAGAGAGAGAATATGCTATCAAGTTATTACTAGAGTTCTGCAATGATGAAGATTGTTGTGTGAGAATTGCATCAGAAAAAGGTGCATTAGTTCTTCTCTCGAGTATAGCTGGAAATATGGAGTATCCATCTTTGTCTAACTCAGCTGAGGAAGTCTTAAGTCGGATTGAGAGGGTAGAGGATAATGTTCAATGTTTAGCAGCAGCTGGAAGATTTGGACCATTAATTTCACGGTTACATGATGGTTCTGTTGGTGTAAAGATAGATATGGCTTCTCTGGTGGGAAGGATGACCCTGACAAATAGCTGTAAAGAACAAATTGCAAGGCAAGGTGCCAGAGTTTTTGTTGAACTTCTGTCTAGTCAAGAAGGAAGGGGACCAAGTCTGCAGGCATTGTATAACTTGTCAGCATTGGATGGCAATGCAACCATCCTTATTGAGTCTTCAGTCCTTGCACCTCTTATAGAAGTTTTATTTGACGAGCTGGATCCATCATATGATCTGAAGTCGTTAGCTGCTTCAACAATTGCGAATATTGTATCTAAGCCAGGGCATTGGGAATTAGCATCTGCTGACAAAAACGGAAACCCAATGCAGTCAGAAATTATTGTTTTAAGACTTTTGGGGCTTTTAAACTGTTTGTCCTCCCAGTGTCAAGTGACAGTTCTTCGCATTCTTTGTGGTATTGCATCTTCTCCTCAGGCATCAGAGTTAGTAGCAAGTCATATCATGTCCGAGGGTGGGTTTAGAACGGTCTTACCATTTCTTGAACATCCAGAAGTTGAACACAGAGTGGTTGCTTTTAAGCTTACAAGATTACTATCAGAATGGTCTAGTCAAAATATTGCAAATGAGTTGAGACTGTCAAACAAACTTACAATACTCAAAGAAAAACTGTTAAATAACCAATCTACAAGTGATGAGAGATCAGATGCAGCACAGATACTTTCCAATCTTTCCCTCTCAGCAGGTGAAGTACAGAATCTTTTAGGAGGTGATTTTGTGGAACGGACTGCTGTTACTCTCAAGAACCAGCGGCGTGTTCCAAATGCAAGATTTTCTCATACTGCATCAGGCATGCAGGAAGGTCTTGTAGGTCTCTTGCTTCACTTCACAAGGAATCTTGATCAACAATCTCTTAATATGGTCAGAGAAAATCGTCTCATGGCGATTTTCTGTGAGCAGCTGGATTATACTTCAAAACCGAAGGTAAAACGACTTGCTGCCATTGGATTGAAGAACTTGTCAGAATTTGGAATGTCAGTTACTGCTAGAGACTCTAAACCACCATCTTCTGGTGGGTTCTGCTCTTCTCTTGTGCTCGTGTGTGGGAGAGGTGCTAGTCAACCCTCCACATGTCCTATTCACAACGGAGCATGTGACGAAGATAGTCAGCTGTGCCTGCTCAAGAGCAACTGTATCAAACCCCTTGTTGATACCCTCAATGACAATGACACTGATGTTCAGCTTGCTGCAGTGGATGCACTGTCTACTCTAGTATCAGATTACACATCTCGCAGTTTCAAAAGGGTTGTTGATGAGCTTGAGCAACTGGGTGCAGTTGATTCTCTCATCACTCTTTTTACTGAGGTTAGAACTGAGGAGCTTAGGGAGAAGACAATTTGGATGATAGAAAAGATATTAAGAGTGGAAAGCATGAGCAATCGGCATGCACTGAATCATTCTCTTGTGAGAGGTTTGGTTGAAGCCTTCAAGCATGGGAATACCAACACAAGGAAACATGCTCAAGATGCTCTCACCCTTCTAAAGCAGTTATCAGGAGTTAGTGGAAAAACATCGAGTCAAACTCGAGCTCAGAGATAG 3126 0.4747 MSIHYSPSPSPPPALHSIRRSLSDISSPPPDHRPFDAPRRFAAFAHRLSHLLLLLLPPPHSPPLHTALKGLAAELSKAAETVSVYNNGSKILVLVNCKTLSSALQQRATALAAWLTLLASALPDAGDDELRKKASDLSRDMKLAQFKVTENEERVRCTLEKEGEGRESSKAVQSGIVMDLARALGFDPGDRAEFCNQVKLFKNDPFRSHSVPERRVLMSLERILSNWSVEPVTVTPNWDFEIVDDAAAPVFAFKSFLCPLTKEVMRDPVVVLESSQAYERTAIEYWFERCIQDGREPTCPITGTVLKSLELKPNIGLAGAIEEWVGRVVEYQIKSAVQYLSEEPLSVDHVERALDHVYKVSEEHPTRRYIIRNAGVVLLIVTVLSNNSKTIGSHLRSKALMTLLSIAKDEESRKIMLERGITRLAVHSLIGSSEKEREYAIKLLLEFCNDEDCCVRIASEKGALVLLSSIAGNMEYPSLSNSAEEVLSRIERVEDNVQCLAAAGRFGPLISRLHDGSVGVKIDMASLVGRMTLTNSCKEQIARQGARVFVELLSSQEGRGPSLQALYNLSALDGNATILIESSVLAPLIEVLFDELDPSYDLKSLAASTIANIVSKPGHWELASADKNGNPMQSEIIVLRLLGLLNCLSSQCQVTVLRILCGIASSPQASELVASHIMSEGGFRTVLPFLEHPEVEHRVVAFKLTRLLSEWSSQNIANELRLSNKLTILKEKLLNNQSTSDERSDAAQILSNLSLSAGEVQNLLGGDFVERTAVTLKNQRRVPNARFSHTASGMQEGLVGLLLHFTRNLDQQSLNMVRENRLMAIFCEQLDYTSKPKVKRLAAIGLKNLSEFGMSVTARDSKPPSSGGFCSSLVLVCGRGASQPSTCPIHNGACDEDSQLCLLKSNCIKPLVDTLNDNDTDVQLAAVDALSTLVSDYTSRSFKRVVDELEQLGAVDSLITLFTEVRTEELREKTIWMIEKILRVESMSNRHALNHSLVRGLVEAFKHGNTNTRKHAQDALTLLKQLSGVSGKTSSQTRAQR 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00679 1041 ProSiteProfiles U-box domain profile. 251 331 IPR003613 GO:0004842|GO:0016567
Cca01g00679 1041 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 1035 - -
Cca01g00679 1041 Gene3D - 328 853 IPR011989 -
Cca01g00679 1041 SMART Ubox_2 255 324 IPR003613 GO:0004842|GO:0016567
Cca01g00679 1041 SMART arm_5 534 571 IPR000225 GO:0005515
Cca01g00679 1041 SMART arm_5 895 935 IPR000225 GO:0005515
Cca01g00679 1041 SMART arm_5 364 408 IPR000225 GO:0005515
Cca01g00679 1041 SMART arm_5 942 983 IPR000225 GO:0005515
Cca01g00679 1041 SMART arm_5 810 851 IPR000225 GO:0005515
Cca01g00679 1041 SMART arm_5 572 615 IPR000225 GO:0005515
Cca01g00679 1041 SUPERFAMILY ARM repeat 646 853 IPR016024 -
Cca01g00679 1041 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 1035 - -
Cca01g00679 1041 Pfam U-box domain 256 325 IPR003613 GO:0004842|GO:0016567
Cca01g00679 1041 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 327 IPR013083 -
Cca01g00679 1041 MobiDBLite consensus disorder prediction 1 32 - -
Cca01g00679 1041 SUPERFAMILY ARM repeat 381 1025 IPR016024 -
Cca01g00679 1041 Pfam Armadillo/beta-catenin-like repeat 900 934 IPR000225 GO:0005515
Cca01g00679 1041 Coils Coil 483 503 - -
Cca01g00679 1041 Gene3D - 881 1025 IPR011989 -
Cca01g00679 1041 SUPERFAMILY RING/U-box 254 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00679 Cca-Chr1 8894050 8900301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00679 253 1030 U-box Gene Family AT1G20780 30.314 2.21e-87 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00679 - - ccaj:109816409 1953.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00679 01 8894050 8900301 Cca01g00679 01 8894050 8900301 ECH