Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00669 ATGGAGGCGGAGGGTTTCGATAATTCTCAGACCAAGAAACGTAAAAAGGGCTTTTCAAGGAAGCTTAATGCCGGTCAAAAAGTGGAGGTGAGGAGTTTAGAGGTGGGTTTTGAGGGATCATGGCACCCTGCGACAGTTCTCCAATGCGAGAAGTTGAAGCGCCGCGTCATATATGATAGTGTTTTGGATGATAATGGGGTGGATTATCTTGAGGAGGTAGTGAGTGTTTCAAAAGCTTTGGATGGTGATGTTGAAAAGGCAAACTTCTACGAGCGTGGGATCATTAGGCCGGTGCCTCCATTGGTTGATTTTCAGAAAGCGGACCTTAGGTTTGGTCTTTGTGTTGATGTCAACCATGAGGAAGCTTGGTGGGAAGGTGTTATATTTGACCACTATAATGGAATGACGAAGAGGAATGTGTTTTTCCCTGATTTGGGTGATGAAATACAAGCTGAAATGCATCAGATGCGGATTACTCAGGACTGGGATGAAGTTACAGAGGAGTGGGGGCGGCGAGGGAAGTGGGTGTTTCTTGAATTGGTTGAGGAGCAGAAGGGGAAATTGTTTGTTGCAGTTTCAGCTAAGCAAATTTGGTATGATGTGCGCATAAAGAGGGAATTTGAGATGATTAGAGAGTGGACATGTAATGTGGAGTACTTGTGGAGAAAAATGGTGGTGGAGGTAGTTAATGACTACTTATCTGTGATGGTAAAAGAAGTTATCTCAGCCTTAAACCTTCCAGGGAGTTTATTAAATGAAGCACAAGAGCCGGAATCTGCTGAAGCTGTGGCTGGTGTTGACTTAAATACGACCTTGCCTGATAAGGAAACTCATGTCAAAGAGATCTTACCTGAGTTTCTAAAAGAAATTGGCCCCAATGGTGGTGCTTGTGAAGTGGTTTCAGGTGCTAACTGTTTTGAAGAAATGACAACTTCCGACTGTTGGATACCTGTGAAGTTCTCTGAAGTTGAATTCTGCCCCGATGCTGTCATTGAATATCCACTGGCTTCCAAACGTGCAACTAAGGCATTTTGGATGGAACGATTGCAAAAACATCTTGTGTATCTTGGATGGAAAATTGAGTGGACAAATAAACTTGGCGTTAAACGCTATAGGTATCATGATAAACCAGGCCATAAACGTTACCTTTCACTCCTTGAAGTTTGTAAGGTTATGAAAAACAACCCTAACTCCTTGCAGTTCCAAAATGATCAGAGTATAATGCAGCATCCTGCAGTTGACTGTCATCTTTTAGAGGTGCCTCTTAATCCATCAGAAAATATTTCAACTGTGCCATTTTCTCCTGTTGAAGATGGAGTTGAAGATGAACCTGAGTTTTGTCCTCAAGCTGTTTTGCAATATTATTCTGCCCATATATCCAATAAGAATCGGGTTGATAAAAAAAAATGGATACCGAAAGCAAAGAAGCATCTGTTAGCAGAAGGATGGGTTTTTGACTATCCACCTCCAAATAATAAGAAAAGGGGAATAATATACATGTCTCCACAAAATCAGAAATTCCCAACACTCCATGCAGCATGCCGATTTTGTATCACAAAAAATACTCCTAAATGGGCTATGTCTGGCAATCAACCTTTAAATGTCTCAGGCATGAATGAGGAAAATGTTGATCAGCTACCCCAGTTGCTTCCAAAAGACGCTGAGTTGCAGGCTATGGATGGTGCTGCTGCTAGTAGATCAAGTGCAATTCGTAAGCGGAAAAGCTTGAGGGATTCAAAGGCCAACATACCTAACTGCCAAAGCAATGGATTGCCTCTATGGGTGCTAAGATCAAAGAAGAGGGTGCAAAAGGTGCCTGCCCCTTCTTTTTTACAGCAAAAACCTATAAATGTTCTGTCTTGGTTGATAGACAGCAACCTCATCTTACCAAGGTCGAAGGTTTACTATAAGGAAAAAGGCAGGTATCGTGCAGTCCGTACATTGGGTGAAGGTAAAATAACTCGTGATGGAATTAAGTGTAATTGTTGCATGAAGATATTCAGTTTTGTTGGCTTTGAAAATCATGTTGGTGGCAGTAGTACCTGCAGACCCTCTGCTAGTATCTTTTTGGAAGATGGTAGATCACTCTTGGATTGCCAGATAGAAATGATGCAAGATCATAACACAAGGGAAACTAGCGGAAAGTCCCTCAGTGAATTGTCTATAGCTGAGAATGACTACATTTGTTCTGTTTGCCACTATGGCGGTGAACTTATTTTATGTGATAAATGTCCATCTTCTTTTCATAAGACGTGTCTCGGTTTGGAGGAAATACCTGATGGTGACTGGTTTTGTCCATCTTGTCGCTGCGGGATTTGTGGCCAAAGTAAAATTGATGGAGATGAGGTTGGACATTCCCTAACTTGCATTCAGTGTGAACATAGATATCATGTTTGGTGCCTGAAAGATGGAGCTGTAGATATATCGGGATATCGCGGAAACTGTTTCTGTGGAAAAGACTGTGAAAAGATATATGAGGGCCTTCATAAATTATTAGGAAAACCAATTTCAGTGGGTGCGGACAAGCTAACTTGGACCTTGGTGAAGTTCATCGACCCTGATCATTGTGACATTGGTAGCATTAAAAGTGACTTATTGGCAGAAAGTTACAGCAAACTCAATCTGGCTCTTTCGGTGATGCACGAGTGTTTTAAGCCCCTAAAGGAATCTTTGACTAGCAGAGATCTCGTGGAAGATGTTATATTCAGCAAATGGTCAGAGCTAAACCGATTAAATTTCCAGGGTTTCTATACTGTGCTACTTGAGAGAAATGAAGAACTGATCAGTGTTGCAACTGTTAGGGTCTATGGGAAGAAGGTAGCAGAAGTACCTCTTGTTGGTACCAGATTACAATATCGTCGACATGGAATGTGCCATATCTTAATAAATGAGCTTGAAAAGAAGCTCACACAATTAGGTGTGGAGAGGCTTGTTTTGCCTGCTGTTCCTAGTGTGCTAGAAACATGGACGGGCTCTTTTGGCTTCGCAAAGATGACTAATTTTGAGAGATCTCAATTTCTGGACTATACTTTCCTAGATTTTCAGGGTACCATCATGTGCCAGAAGCTGTTGACAAATATTCCACCTCGAGATTTAGTTTTGTTAATAGAATCACAACCAAAATGTGATGTATACCAAGTAGAAGAGATTGATGAAGGAAGGATAGTGGATCAACAAATAGAATCCTGTGCATGCGACAATGGCCATGCTATTGGTGCTATTGACCCGATCACTGTGGTGGAGCAACCGAGTTCTGGGAATCAAGAGTGCCAGAATGAAACAAGCAGATCACAGGGCTCTGTTGATAAACAAGTTGACCCGTACAAGTTCTTCTATACACGAAGGAAAAGGAAGAAGACATGTGAAGAGGAATCAAGATGA 3381 0.417 MEAEGFDNSQTKKRKKGFSRKLNAGQKVEVRSLEVGFEGSWHPATVLQCEKLKRRVIYDSVLDDNGVDYLEEVVSVSKALDGDVEKANFYERGIIRPVPPLVDFQKADLRFGLCVDVNHEEAWWEGVIFDHYNGMTKRNVFFPDLGDEIQAEMHQMRITQDWDEVTEEWGRRGKWVFLELVEEQKGKLFVAVSAKQIWYDVRIKREFEMIREWTCNVEYLWRKMVVEVVNDYLSVMVKEVISALNLPGSLLNEAQEPESAEAVAGVDLNTTLPDKETHVKEILPEFLKEIGPNGGACEVVSGANCFEEMTTSDCWIPVKFSEVEFCPDAVIEYPLASKRATKAFWMERLQKHLVYLGWKIEWTNKLGVKRYRYHDKPGHKRYLSLLEVCKVMKNNPNSLQFQNDQSIMQHPAVDCHLLEVPLNPSENISTVPFSPVEDGVEDEPEFCPQAVLQYYSAHISNKNRVDKKKWIPKAKKHLLAEGWVFDYPPPNNKKRGIIYMSPQNQKFPTLHAACRFCITKNTPKWAMSGNQPLNVSGMNEENVDQLPQLLPKDAELQAMDGAAASRSSAIRKRKSLRDSKANIPNCQSNGLPLWVLRSKKRVQKVPAPSFLQQKPINVLSWLIDSNLILPRSKVYYKEKGRYRAVRTLGEGKITRDGIKCNCCMKIFSFVGFENHVGGSSTCRPSASIFLEDGRSLLDCQIEMMQDHNTRETSGKSLSELSIAENDYICSVCHYGGELILCDKCPSSFHKTCLGLEEIPDGDWFCPSCRCGICGQSKIDGDEVGHSLTCIQCEHRYHVWCLKDGAVDISGYRGNCFCGKDCEKIYEGLHKLLGKPISVGADKLTWTLVKFIDPDHCDIGSIKSDLLAESYSKLNLALSVMHECFKPLKESLTSRDLVEDVIFSKWSELNRLNFQGFYTVLLERNEELISVATVRVYGKKVAEVPLVGTRLQYRRHGMCHILINELEKKLTQLGVERLVLPAVPSVLETWTGSFGFAKMTNFERSQFLDYTFLDFQGTIMCQKLLTNIPPRDLVLLIESQPKCDVYQVEEIDEGRIVDQQIESCACDNGHAIGAIDPITVVEQPSSGNQECQNETSRSQGSVDKQVDPYKFFYTRRKRKKTCEEESR 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00669 1126 CDD NAT_SF 919 979 - -
Cca01g00669 1126 SMART ring_2 770 817 IPR001841 -
Cca01g00669 1126 SMART ring_2 729 768 IPR001841 -
Cca01g00669 1126 PANTHER PHD ZINC FINGER PROTEIN 5 264 - -
Cca01g00669 1126 PANTHER PHD ZINC FINGER PROTEIN 350 1047 - -
Cca01g00669 1126 MobiDBLite consensus disorder prediction 1083 1102 - -
Cca01g00669 1126 CDD PHD2_CHD_II 729 768 - -
Cca01g00669 1126 Gene3D - 867 1028 - -
Cca01g00669 1126 ProSiteProfiles Zinc finger PHD-type profile. 726 771 IPR019787 -
Cca01g00669 1126 SMART PHD_3 770 822 IPR001965 -
Cca01g00669 1126 SMART PHD_3 728 769 IPR001965 -
Cca01g00669 1126 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 5 264 - -
Cca01g00669 1126 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 350 1047 - -
Cca01g00669 1126 Pfam Tify domain binding domain 651 703 IPR032308 -
Cca01g00669 1126 MobiDBLite consensus disorder prediction 1083 1108 - -
Cca01g00669 1126 Pfam Agenet domain 25 100 IPR008395 -
Cca01g00669 1126 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 905 1004 IPR016181 -
Cca01g00669 1126 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 863 1024 IPR000182 GO:0016407
Cca01g00669 1126 SUPERFAMILY FYVE/PHD zinc finger 712 769 IPR011011 -
Cca01g00669 1126 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 716 820 IPR013083 -
Cca01g00669 1126 SMART agenet_At_2 20 103 IPR014002 -
Cca01g00669 1126 SMART agenet_At_2 107 164 IPR014002 -
Cca01g00669 1126 Pfam PHD-finger 728 770 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00669 Cca-Chr1 8798601 8805081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00669 595 972 PHD Transcription Factor Family AT5G58610 50.646 2.63e-118 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca01g00669 Agenet 2.4e-15 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00669 - - ccaj:109815079 1897.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00669 01 8798601 8805081 Cca01g00669 01 8798601 8805081 ECH
Cca01g00669 01 8798601 8805081 Cca05g01271 05 30435335 30442619 PCT