Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00665 ATGTCTTGTTCCGTGGCAGTTCCCAGTTCCCCGGTCTTCTCTCTCTTCCacaacaacaacaacagtaacaacaacaacaacaaaaacaacTCTTCCGCAACCGCAGAACATCTCATGCTTTCTCTTCCCATTACGACGCCGTCTTGTTCCTCAACCTCTCCACCTTCCTCTCCCTTGCTCAAGAAGAAGAGACCCGCCAAACTCGACATTCCGGTCGCTTCTCTCGCCTTTGGCCTCCCCGTCACGGCGCCGTCGCCCGCCAGGGACGCCGTCGTCCAAGCTGACGGAAGTGCTTTCTCTGTGTATTGCAAGAGAGGAAGGAGGCACCACATGGAGGACCGTTACTCCGCCGCCGTTGATCTTCGTGGTGAACCAAAACAGGCCTTTTTCGGGATATTTGATGGGCATGGGGGCACAAAGGCTTCGGAATTCGCTGCACACAACTTGGAAAAGAATGTGTTGGATGAGGTGGTTAGAAGAGATGAAAGTGACATCAAGGAGGCAGTGAAGCATGGGTATCTCAACACAGATTCTGAATTCTTGAAAGAGGATCTTCATGGTGGTTCATGCTGTGTGACAGCGTTGATTAGGAATGGTAACCTTGTTGTGTCCAATGCTGGTGATTGTCGTGCTGTCATTAGCAGAGGTGGTGTGGCTGAAGCCCTCACATCTGATCACAAACCTTCAAGGAAAGATGAAAAGGACAGAATTGAGACTCAGGGTGGTTATGTTGATGTGTGCCGTGGTGTTTGGAGGATCCAAGGGTCATTGGCTGTTTCTAGGGGAATTGGAGATAGAAACCTGAAACAATGGGTGATCGCTGAACCTGAGACCAAAGTTCTCAAAATTGAACCGCAGCATGACTTGTTGATCTTGGCTTCAGATGGGTTATGGGAAAAGGTTAGCAACCAGGAAGCAGTGGATATTGCTCGAGTAGGGAACAATAGACAGCAACCGTTGCTGGCTTGTAAAAAGCTGGTAGAATTATCTGTGTCACGAGGCTCTGTTGATGATATAAGTGTTATGATTATCAAATTGCAAAACTATGTTTGA 1053 0.4691 MSCSVAVPSSPVFSLFHNNNNSNNNNNKNNSSATAEHLMLSLPITTPSCSSTSPPSSPLLKKKRPAKLDIPVASLAFGLPVTAPSPARDAVVQADGSAFSVYCKRGRRHHMEDRYSAAVDLRGEPKQAFFGIFDGHGGTKASEFAAHNLEKNVLDEVVRRDESDIKEAVKHGYLNTDSEFLKEDLHGGSCCVTALIRNGNLVVSNAGDCRAVISRGGVAEALTSDHKPSRKDEKDRIETQGGYVDVCRGVWRIQGSLAVSRGIGDRNLKQWVIAEPETKVLKIEPQHDLLILASDGLWEKVSNQEAVDIARVGNNRQQPLLACKKLVELSVSRGSVDDISVMIIKLQNYV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00665 350 Pfam Protein phosphatase 2C 100 339 IPR001932 -
Cca01g00665 350 PANTHER PROTEIN PHOSPHATASE 2C 3 349 IPR015655 GO:0004722|GO:0006470
Cca01g00665 350 ProSiteProfiles PPM-type phosphatase domain profile. 98 346 IPR001932 -
Cca01g00665 350 SMART PP2C_SIG_2 109 346 IPR001932 -
Cca01g00665 350 SUPERFAMILY PP2C-like 99 348 IPR036457 -
Cca01g00665 350 CDD PP2Cc 99 346 IPR001932 -
Cca01g00665 350 ProSitePatterns PPM-type phosphatase domain signature. 129 137 IPR000222 GO:0043169
Cca01g00665 350 Gene3D - 88 350 IPR036457 -
Cca01g00665 350 SMART PP2C_4 88 344 IPR001932 -
Cca01g00665 350 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 3 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00665 Cca-Chr1 8712940 8714986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00665 1 346 PP2C-type Phosphatase Gene Family AT1G07160 58.684 1.09e-139 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00665 K17506 - gmx:100813073 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00665 01 8712940 8714986 Cca01g00665 01 8712940 8714986 ECH
Cca05g01274 05 30509130 30511671 Cca01g00665 01 8712940 8714986 ECH
Cca01g00665 01 8712940 8714986 Cca05g01274 05 30509130 30511671 PCT