Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00659 ATGCCAACCCAATCTGAGTCACCCAACAACAAGTCCATGAGCACGTTGACCCAAATGTTTCAGAACATTTTCTCAGACAACAGCAACATCATGCTTGCAGCCATCATTTCCCTTCTCCTAGTCATTCTCTTTGTCCTTCTCCTCCACCTCTACGCCAAGTGGTTCCTCGCTCAGGCACAGGCTCAGTCccgccgtcgccgccgccgccggagaaccaccgtcaccgtctccgacgtcctcgGCCCGGCGAGGTTCCACCACTTCCACAGCTTCAACATAGAAGACTCATCACCACTCTCAACCAAAGGCTTAGATTCCTCCACCATTAGGGCAATTCCACTCTTCATCTATGACCACAACAAGAAGGTCCAAGAAGAATATGAAGAACTTGAGTGTGTGATTTGTTTGAGTGCATTTGAGGGTGGTGAAGTTGGAAGGTGTTTACCAAAGTGTGGCCATGGTTTTCACGTGGAGTGCATTGACATGTGGTTGAGTTCACACTCCAATTGCCCTATTTGTAGGGCTTCAATTGTTGTTGAGAGTGATTCTTCTAGGGTGGTGGCATCAAGTGATCATGGTGGTGATGATTTGGTTGAGATTGTGGTTGATGGTGGTTCTGATGAGATTAGAGAGAGTCATCATGAGAATGCGAATAGTAATGGTAATGGAGTAGTTAATCACGTTTCTGTGTCGGGAACTTCTTCGTTTTTTGGATGCTCTTTGGAGAGAATGCTCGGCAACAAGTAA 747 0.4217 MPTQSESPNNKSMSTLTQMFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYAKWFLAQAQAQSRRRRRRRRTTVTVSDVLGPARFHHFHSFNIEDSSPLSTKGLDSSTIRAIPLFIYDHNKKVQEEYEELECVICLSAFEGGEVGRCLPKCGHGFHVECIDMWLSSHSNCPICRASIVVESDSSRVVASSDHGGDDLVEIVVDGGSDEIRESHHENANSNGNGVVNHVSVSGTSSFFGCSLERMLGNK 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00659 248 CDD RING-H2_EL5_like 131 174 - -
Cca01g00659 248 SMART ring_2 132 173 IPR001841 -
Cca01g00659 248 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Cca01g00659 248 SUPERFAMILY RING/U-box 125 179 - -
Cca01g00659 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 179 IPR013083 -
Cca01g00659 248 Pfam Ring finger domain 131 174 IPR001841 -
Cca01g00659 248 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 246 IPR044675 -
Cca01g00659 248 PANTHER - 1 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00659 Cca-Chr1 8619012 8620140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00659 22 181 Rapid Response to Elicitors AT3G16720 39.130 5.18e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00659 - - pvu:PHAVU_006G070000g 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00659 01 8619012 8620140 Cca01g00659 01 8619012 8620140 ECH
Cca01g00659 01 8619012 8620140 Cca05g01282 05 30627498 30628740 PCT