Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00639 ATGGAAGAAGCGTGGAGTTGGTTGAAGCTCTTCCGCgtctttgtggcggtcatgtctttgtctttgtctctgtctCCCTTCACCATGGAACCTGTTTCGTCTTCGACTCTCAATACCCAAGGGTTGGCGTTGAAAAAGATGAGAGAGAGGTTGGTGAGAGACCCAATGGATGCTTTGTGGAGTTGGAATGGCAAAGAAGAAGGAGGGATTGATCCTTGCTCATGGTTCGGAGTAGAGTGTTCCCATGGCAATGTTGTATCCTTGAATTTGAAAGATCTATGTCTCCACGGAACACTAGCACCCGAAATTGGGAAACTAGTTCACATAAAATCAATCATTTTGCGCAACAACTATTTCTATGGAGACATCCCTAAGGAGATACTACAATTAGAGGACCTGGAAGTACTTGACTTAGGATATAACAACTTTAGTGGACAATTTCCATCTCATGACCTAGCAAGCAATCCATCTCTCACTACCCTTTTGTTGGACAACAATGACCATCTTGCCATCTTAACCCCAGAAGTGAATAAGCTCAAGACATTTTCTGAATTGCATGTACATGAAGAACAACTAACTGGTGCCACTAGAGAAGCATGTGTTAGTGTTAGCATATATAATATCAGGAACAATGGCCAACATGGGGATATAGCATACGAAAGGAAACTTCTCCAAGAAACAAATGGTGTTAAGAGGGGTGATGATGAAAAAGAAACTCTTTCACCATCACCTTTTCCCTCTACACTATCACCACTTTCTGAGCCTTTCTCACCATCAGAGAGTCCGTCAGACTCACCAACATCTCCAGAAGTttccccttcaccatctccatctctccctactttctttttcactctttcaccctcaccttcacctGTGGTAGCACAAACTCCAGATATACCACCTCCAGCAAATCCACCTATGGTTGAGTCCACACCATCACCTTCCAATTGGGTTGCAATGCCTTCTCCTGCCTCATCTTCAAACAAAGGGAATGCAGACAGTTCAAAATCAAAGAAAAGTACTGTGATTATTTGGTCTACAGTTGGGGGATTCTCCTTCCTGATTTTGGTGTCAGCGGTTGTTCTTGTTTGCTTTAGAAGTAGTAAGGTTGTAACAGTAAAACCTTGGGCCACAGGTTTGAGTGGTCAGCTGCAGAAAGCATTTGTATCAGGTGTTCCAAGTCTGAAACGAACAGAACTTGAAGCAGCTTGTGAAGATTTTAGCAACATTATTGGTTCACTTCCTGATGGGACTATTTATAAGGGTACTCTCTCCAGTGGAGTTGAGATAGCTGTAGCATCTTCTTCAGTGACTTCATTCCAAAACTGGTCAAAAAATATGGAAACTCAATTCAGAAAGAAGATCGAGATGTTGTCGAGAGTGAACCACAAGAATTTTGTGAATCTTATTGGATATTGTGAAGAGAATAAGCCATTCACAAGGATGATGGTTTTTGAGTATGCCCCAAATGGAACACTATTCGAGCATCTACACATTAGAGAAGCAGAACAACTAGACTGGGGAATGAGGATGAGAATAGCAATGGGAATAGCCTACTGTCTGGAACACTTGCATCAGCTGACACCACCCATTGTCTACAGAAACATACTATCTTCCTCTATATACTTGACTGAAGATTATGCTGCTAAATTATCAGACCTTAGTTTCTGGACTGACATGGACACTGCAAAGAAGGGTTCAGAAGCCACACAGCTCTTAGAAACAACTCCAGAATATATAAAGGCTAATGTATACAGCTTTGGGGTACTATTGTTTGAATTGATTACAGGGAGAGTTCCCTATGCAGTGGAGAATGACTCACTTGATGATTGGGCAGGAGAATATATAAAGGGGCAACCCTTGAGAGAGTTGGTGGACACAAGCCTCAACTCTTTGCAAGCAAATGAAATTGAAAAATGGGCTGAAGTGATTAACAGCTGTGTAGATCCTGATCCAGAAAAAAGGCCAACTATGATAGAAGTTTCTGCTAAGTTGAAGGAAATCACTGCTATGGGGCCTGATGGAGCAACTCCAAAACCATCTCCTCTTTGGTGGGCAGAAATAGAAATTATGTCCACTGACTTTAATTCAGATATTAATCCATAA 2109 0.3964 MEEAWSWLKLFRVFVAVMSLSLSLSPFTMEPVSSSTLNTQGLALKKMRERLVRDPMDALWSWNGKEEGGIDPCSWFGVECSHGNVVSLNLKDLCLHGTLAPEIGKLVHIKSIILRNNYFYGDIPKEILQLEDLEVLDLGYNNFSGQFPSHDLASNPSLTTLLLDNNDHLAILTPEVNKLKTFSELHVHEEQLTGATREACVSVSIYNIRNNGQHGDIAYERKLLQETNGVKRGDDEKETLSPSPFPSTLSPLSEPFSPSESPSDSPTSPEVSPSPSPSLPTFFFTLSPSPSPVVAQTPDIPPPANPPMVESTPSPSNWVAMPSPASSSNKGNADSSKSKKSTVIIWSTVGGFSFLILVSAVVLVCFRSSKVVTVKPWATGLSGQLQKAFVSGVPSLKRTELEAACEDFSNIIGSLPDGTIYKGTLSSGVEIAVASSSVTSFQNWSKNMETQFRKKIEMLSRVNHKNFVNLIGYCEENKPFTRMMVFEYAPNGTLFEHLHIREAEQLDWGMRMRIAMGIAYCLEHLHQLTPPIVYRNILSSSIYLTEDYAAKLSDLSFWTDMDTAKKGSEATQLLETTPEYIKANVYSFGVLLFELITGRVPYAVENDSLDDWAGEYIKGQPLRELVDTSLNSLQANEIEKWAEVINSCVDPDPEKRPTMIEVSAKLKEITAMGPDGATPKPSPLWWAEIEIMSTDFNSDINP 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00639 702 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 3 695 - -
Cca01g00639 702 MobiDBLite consensus disorder prediction 241 267 - -
Cca01g00639 702 ProSiteProfiles Protein kinase domain profile. 406 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00639 702 Gene3D Transferase(Phosphotransferase) domain 1 489 675 - -
Cca01g00639 702 MobiDBLite consensus disorder prediction 277 293 - -
Cca01g00639 702 Pfam Leucine rich repeat 108 167 IPR001611 GO:0005515
Cca01g00639 702 SUPERFAMILY Protein kinase-like (PK-like) 389 665 IPR011009 -
Cca01g00639 702 Pfam Leucine rich repeat N-terminal domain 38 81 IPR013210 -
Cca01g00639 702 Pfam Protein tyrosine and serine/threonine kinase 410 666 IPR001245 GO:0004672|GO:0006468
Cca01g00639 702 MobiDBLite consensus disorder prediction 294 310 - -
Cca01g00639 702 Gene3D Ribonuclease Inhibitor 36 240 IPR032675 -
Cca01g00639 702 Gene3D Phosphorylase Kinase; domain 1 382 488 - -
Cca01g00639 702 PANTHER PROTEIN MALE DISCOVERER 2 3 695 - -
Cca01g00639 702 MobiDBLite consensus disorder prediction 311 336 - -
Cca01g00639 702 MobiDBLite consensus disorder prediction 230 336 - -
Cca01g00639 702 SUPERFAMILY L domain-like 51 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00639 Cca-Chr1 8311183 8321864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00639 301 669 Receptor kinase-like Gene Family AT1G79620 32.195 3.16e-40 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Cca01g00639 PK_Tyr_Ser-Thr 9.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00639 - - ccaj:109788264 1296.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00639 01 8311183 8321864 Cca01g00639 01 8311183 8321864 ECH
Cca05g01288 05 30682043 30688417 Cca01g00639 01 8311183 8321864 ECH
Cca01g00639 01 8311183 8321864 Cca05g01288 05 30682043 30688417 PCT