Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00638 ATGTCCATGGCTGATGATAAGGGTGATAGATCATGCTCCTCCATCACCATACCCCTTCTTGTTGATGAAAAAGTGAATGGTTCAGATGAGGCTTTGGTGGCCAAAGCTTGTGATCTACACACACCTCATGCGGGTAACACCCCATTTTTCAAGACTTGCTTCCATCTCATCAATGCCCTCTCAGGAGTTGGAATCATATCAATGCCTTATGCTCTGGCATCTGGTGGATGGTTAAGCATATTTCTTCTGTTTGTGATTGCCATTTCATGTTGTTACACGGGCATGTTGGTGAAAAGATGCATGGACATGGACCCTGATATTAGGACCTTCCCTGACATAGGTCAACGTGCATTTGGAGACAAGGGAAGGGTGATTGTATCAATTGCCATGAACTCTGAGCTCTATCTAGTTGTGACAGGTTTTCTGATCTTAGAGGGTGACAACCTTAACAAGCTAGTGCCAAACGTGGAACTTGACCTAGCAGGGTTAACATTTGGTGGCACAAAAGTTTTCACTGTGGTTGCTGCCCTTGTTATTTTGCCTAGTGTTTTGTTGGAGGATTTGAGCCTGCTGTCTTATGTCTCTGCTAGTGGTGCTTTGGCTTCTTCCATTTTTCTCCTCTCTTTGTTTTGGAATGGAACCATTGATGGCACTGGCTTTCATGCAAAGGGAACTTTGTTCAGATTTAGTGGAATACCTGCTGCTGTTAGTTTGTATGCCTTCTGCTATAGTGCTCATCCAATCCTTCCTACTCTCTACAATTCCATGAGAGACAAAAGCCAGTTCTCTAGGGTGCTGTCTGTATGTTTTTCAGTATGCACCCTTGGTTATGCAGCAGCTGGTGTGTTTGGCTACTTAATGTTTGGACAAGAGGTTGAATCTCAGGTGACACTGAACCTCCCAACAAGCAAGTTCAGTTCACACGTGGCAATATTCACCACCTTGGTCAACCCTATAACAAAATATGCATTGATGATCACACCAGTCATAAACGCCATAAAAAACAAGGTTTCATGGCATCACAACAAAAGGTTCACTCACATGCTTGTTAGTACCACAGTGCTCATTAGCACTCTTATTGTAGCAGTGACAATTCCCTTGTTTGGATATCTCATGTCACTAATTGGGGCATTGCTTAGTGTCTCGGCTTCAATTTTGGTGCCATCAGTGTGCTACTTGAAGATTTCAGGAGCTTACAAGAGATTTGGGTCTGAAATGATCATCAACTATTCAATAATTGTGATGGGGGTTGCTATTGCTATTGTGGGTACTTATACATCTCTTGTAGACATAGTTCATAATTTGTAA 1308 0.4266 MSMADDKGDRSCSSITIPLLVDEKVNGSDEALVAKACDLHTPHAGNTPFFKTCFHLINALSGVGIISMPYALASGGWLSIFLLFVIAISCCYTGMLVKRCMDMDPDIRTFPDIGQRAFGDKGRVIVSIAMNSELYLVVTGFLILEGDNLNKLVPNVELDLAGLTFGGTKVFTVVAALVILPSVLLEDLSLLSYVSASGALASSIFLLSLFWNGTIDGTGFHAKGTLFRFSGIPAAVSLYAFCYSAHPILPTLYNSMRDKSQFSRVLSVCFSVCTLGYAAAGVFGYLMFGQEVESQVTLNLPTSKFSSHVAIFTTLVNPITKYALMITPVINAIKNKVSWHHNKRFTHMLVSTTVLISTLIVAVTIPLFGYLMSLIGALLSVSASILVPSVCYLKISGAYKRFGSEMIINYSIIVMGVAIAIVGTYTSLVDIVHNL 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00638 435 Pfam Transmembrane amino acid transporter protein 49 427 IPR013057 -
Cca01g00638 435 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 3 433 - -
Cca01g00638 435 PANTHER OS05G0424000 PROTEIN-RELATED 3 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00638 Cca-Chr1 8291352 8296485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00638 38 432 Amino Acid or Auxin Permease AAAP Family AT3G28960 53.788 2.67e-156 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00638 K15015 - gmx:100784690 752.281