Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00633 ATGGCCGCCGCATTGGAGTGCTGGTCGCGCCGCACCGCCGCCGACGAGGACCGCGCGATCCTCGTGCAGCCGCCGCCGCAAGACCCTCCACCCCGAGACTCCTCCATCGTCCACAGGAAGCTCCAGAGGCTCACGCGCAACGTCTCCGAGGCCATTGCGTCCCTCAGAAACTCCCTCAACACCAACGACTCCTCCAAGCAACACAACCTCCTCCGCAACCTCACGCACCTCTGCTCCGCCACGCACCTCCCCGAGAGGCTCGTCTGCAACATCCGCAAGCACTACGATTCTCTGCCTCTCAGTTACTCTCAGGCGGGGTTTGACGTGAAAGATGTGTTTCTTCACATGAAGTTGATGGAGCAAGCTTTGGAGGATGAGCAGGCTGCGATTTTGATTCAAGAGGAGTGCGATGATGAGATTCAGTTTCAGGGGTCTTTGTTCAAGTTGACATTTGCCTGCAACTCTTCAATTTCATGGCCTGCGATGTCGGGTGCGTTGGATAGTTACTCCATTTGCTGCAAGAAGATTCAGATCTTTGAGAAGAAAGGTTTCACCCTTGGGATTGTGTTGCTTCTTGTGCTGTCTGGTGGTGGGCAAGATAAGTTGCTCAGGACCCGGGTTGAAAGTGCTATTAAGATAGCCGTAAAGAAGCCCAAAGCTGGTGGCGTGAAGCTTCCCTTTGGGCTTTGTGGGTGTCAAGAGGAGAACTCCAAGGGGAGAGGGCTTGGAGAGATCGAGGAAGACGATGGCGATGCGATATGTGGAAATGGGTTTGAGAATTTCAGCCAAAAGATTCAGCTTCAGTTGCCATTGCCTAGTTCATCGTTTCTTGTGTTGGTAGATGAATGGCAGACTATTCAGTCAGGTGGGAATGAGATTGAAAAATGGTTATTAAACTCAGATAGTCTCGAGTTTGTGGAGCAAATTGGGCCCAATTCGTACAAGGGGACCTACATGGGGAAAAAGGTTGGCATTGAGAAGCTTAGAGGGTGTGAAAAGGGAAATGCTTATGAGTTTGAGCTCAGGAAAGATCTGCTGGCTCTGATGACATGTGGCCATAGAAATATTATGCAGTTTTGTGGTGTTTGTGTAGATGACAACCATGGGTTATGTGTGGTGACAAAATTTGTTGAAGGTGGTTCTGTTCATGAGTTAATGTTAAAGAACAAGAAGTTTCCGAGTAAGGATGTTGTAAGAATTGCGGTTGATGTGGCCGAGGGGATGAAGTTTATGAATGATCATGGTGTCGCATACAGAGACCTTAACACGCAGAGGATTCTGTTGGATAAGCACGGGAATGCTTGCTTGGGTGATATGGGTATTGTCACTGCCTGCAAGAGTGTTGGAGAGGCAATGGATTATGAAACCGATGGTTATCGGTGGCTAGCTCCAGAGATTATTGCTGGTGATCCTGAGAGTGTGACAGAGACATGGATGAGTAATGTTTATAGTTTTGGCATGGTAATTTGGGAGATAATAACTGGTGAGGCCGCATATTCTGCATATTCACCAGTGCAAGCTGCAGTAGGCATTGCTGCTTGTGGCCTAAGGCCTGAAATCCCCAAGGACTGCCCTCAAACTCTAAAGTCTCTCATGACAAAGTGCTGGAACAACACCCCTTCAAAACGCCCTCAATTCTCTGAAATTTTGGCCATATTGCTGCGACCAAACAACTTCAATAGGTAA 1686 0.4875 MAAALECWSRRTAADEDRAILVQPPPQDPPPRDSSIVHRKLQRLTRNVSEAIASLRNSLNTNDSSKQHNLLRNLTHLCSATHLPERLVCNIRKHYDSLPLSYSQAGFDVKDVFLHMKLMEQALEDEQAAILIQEECDDEIQFQGSLFKLTFACNSSISWPAMSGALDSYSICCKKIQIFEKKGFTLGIVLLLVLSGGGQDKLLRTRVESAIKIAVKKPKAGGVKLPFGLCGCQEENSKGRGLGEIEEDDGDAICGNGFENFSQKIQLQLPLPSSSFLVLVDEWQTIQSGGNEIEKWLLNSDSLEFVEQIGPNSYKGTYMGKKVGIEKLRGCEKGNAYEFELRKDLLALMTCGHRNIMQFCGVCVDDNHGLCVVTKFVEGGSVHELMLKNKKFPSKDVVRIAVDVAEGMKFMNDHGVAYRDLNTQRILLDKHGNACLGDMGIVTACKSVGEAMDYETDGYRWLAPEIIAGDPESVTETWMSNVYSFGMVIWEIITGEAAYSAYSPVQAAVGIAACGLRPEIPKDCPQTLKSLMTKCWNNTPSKRPQFSEILAILLRPNNFNR 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00633 561 PRINTS Tyrosine kinase catalytic domain signature 374 387 IPR001245 GO:0004672|GO:0006468
Cca01g00633 561 PRINTS Tyrosine kinase catalytic domain signature 410 428 IPR001245 GO:0004672|GO:0006468
Cca01g00633 561 PRINTS Tyrosine kinase catalytic domain signature 480 502 IPR001245 GO:0004672|GO:0006468
Cca01g00633 561 PRINTS Tyrosine kinase catalytic domain signature 524 546 IPR001245 GO:0004672|GO:0006468
Cca01g00633 561 SUPERFAMILY Protein kinase-like (PK-like) 282 553 IPR011009 -
Cca01g00633 561 ProSiteProfiles Protein kinase domain profile. 303 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g00633 561 Pfam Protein tyrosine and serine/threonine kinase 338 552 IPR001245 GO:0004672|GO:0006468
Cca01g00633 561 Gene3D Transferase(Phosphotransferase) domain 1 296 556 - -
Cca01g00633 561 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 557 - -
Cca01g00633 561 PANTHER SERINE-THREONINE PROTEIN KINASE 1 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00633 Cca-Chr1 8202597 8206690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00633 294 553 MAP Kinase Kinase Kinase AT2G17700 33.208 6.63e-52 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-7 Cca01g00633 PK_Tyr_Ser-Thr 6.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00633 - - gmx:100819097 980.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00633 01 8202597 8206690 Cca01g00633 01 8202597 8206690 ECH
Cca01g00633 01 8202597 8206690 Cca05g01291 05 30735371 30739924 PCT