Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00625 ATGGGGGGTACCTCTCCTTGTGCTTCTTGCAAGTTGTTGAGACGCCGTTGCTCCAAGGAATGCATCTTTGCACCTTACTTTCCTTCTGATGACCCCAGAAAGTTTGCCATTGTACATAAGGTCTTTGGTGCTAGCAATATCAGTAAGATGCTGCAGGAGCTTCCAATTCATCAAAGAGCAGATGCTGTGAGCAGTTTAGTTTATGAGGCAAATGCAAGAGTGAGAGACCCAGTATATGGGTGTGTTGGAGCCATATCATACCTACAAAGCCAGGTTTCACAATTGCAAATGCAGCTTGCAGTGGCTCAGGCAGAGATTCTATGCATCCAGATGCAGCAACAAGACCCTACCTTAGGGGCCACACAAGTAGTTGACCAAGAGGATCACAAATCACTGCTTCTATGTGAAAACAATAACAACTACGAAATCCTTCCTCACTATCTTAGCTTTCCTTCATCTTCTTCCTCATCTTCCAATGTATTCCAAGACCATCATGAGCCTCTTAAGAGAGAGTCTTTTTGGACTTAA 528 0.4413 MGGTSPCASCKLLRRRCSKECIFAPYFPSDDPRKFAIVHKVFGASNISKMLQELPIHQRADAVSSLVYEANARVRDPVYGCVGAISYLQSQVSQLQMQLAVAQAEILCIQMQQQDPTLGATQVVDQEDHKSLLLCENNNNYEILPHYLSFPSSSSSSSNVFQDHHEPLKRESFWT 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00625 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 172 - -
Cca01g00625 175 Coils Coil 85 105 - -
Cca01g00625 175 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Cca01g00625 175 PANTHER LATERAL ORGAN BOUNDARIES (LOB) DOMAIN PROTEIN 2 172 - -
Cca01g00625 175 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00625 Cca-Chr1 8052068 8054161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00625 3 175 AS2 family AT2G30130 66.842 2.34e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca01g00625 LOB 3.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00625 - - gmx:100819419 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00625 01 8052068 8054161 Cca01g00625 01 8052068 8054161 ECH