Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00624 ATGTCGAAGGTGGTTTGTGTGACCGGAGCCAGCGGCGCCATTGGATCATGGGTGGTGCTCCTCCTCCTTCAGCGGGGCTACACCGTTCATGCCACCGTCCAAGATATCAAGGATGAAAAGGAGACAAAGCATTTGGAGGAAATGGAGGGAGCTAAGAGTGGTCTCCGTCTCTTCGAAATGGATCTTCTTGACATGGATTCCATTGCTGCAGCCGTGAAGGGTTGTTCCGGCGTAATCCACCTTGCATGTCCTAACATAATTGGTCAAGTCAAAGATCCTGAGAAGCAGATATTGGAACCGGCCATAAAAGGGACGGTGAATGTGCTGAAGGCGGCGAAGGAGGCGGGGGCGGAGCGAGTGGTGGCGACGTCGTCCATCTCCGCCATAACGCCGAGCCCAAATTGGCCAGCTGATAAGATTAAGGGAGAAGACTGTTGGACTGACCTTGAATACTGCAAGGAGAAGGGGTTATACTATCCAATTGCAAAGACTCTGGCAGAGAAAGCAGGGTGGCAGTTTGCTAAGGAAACAGGCTTTGATGTGGTCATGATAAATCCAGGCACAGCCTTGGGCCCTTTGATTCCCCCAAGAATCAATTCCAGCATGGCAATGCTTGTTGGTCTTCTCAAAGGGGACAAAGAGACGTACGAGGATTTCTTCATGGGAATGGCTCACGTTAAGGATGTAGCCATGGCACATATATTGGCTCTTGAGAACAAAAAAGCTTCCGGAAGGCACTTGTGTGTTGAAGCTATTCGTCATTGGATTGATTTTGTTGACATTGTTGCTAATCTATACCCTCAGTATAACGTGGTTCGGTTGGAGCATGATACCCAACCAGGGTTGTTGAGAGCAAAGAATGGAGCCCAAAAATTGATGGATTTAGGTCTGGAGTTTACTCCTGCAGAACAAATTATCAAGGAAGCAGTGGAGAGTTTGAAGAGCAGGGGTTATGTATAA 960 0.4854 MSKVVCVTGASGAIGSWVVLLLLQRGYTVHATVQDIKDEKETKHLEEMEGAKSGLRLFEMDLLDMDSIAAAVKGCSGVIHLACPNIIGQVKDPEKQILEPAIKGTVNVLKAAKEAGAERVVATSSISAITPSPNWPADKIKGEDCWTDLEYCKEKGLYYPIAKTLAEKAGWQFAKETGFDVVMINPGTALGPLIPPRINSSMAMLVGLLKGDKETYEDFFMGMAHVKDVAMAHILALENKKASGRHLCVEAIRHWIDFVDIVANLYPQYNVVRLEHDTQPGLLRAKNGAQKLMDLGLEFTPAEQIIKEAVESLKSRGYV 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00624 319 Pfam NAD dependent epimerase/dehydratase family 5 246 IPR001509 -
Cca01g00624 319 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 3 311 - -
Cca01g00624 319 CDD FR_SDR_e 5 297 - -
Cca01g00624 319 Gene3D - 1 319 - -
Cca01g00624 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 313 IPR036291 -
Cca01g00624 319 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 3 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00624 Cca-Chr1 8017629 8021576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00624 3 319 Monolignol Biosynthesis Gene Families AT5G58490 65.300 8.91e-161 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00624 - - gmx:100806281 560.451