Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00619 ATGACAAGGGTTTTCCCAGCACCCCGTTTGCTACAAGCGCCCAATGGATGGCACCAACACGTCAACCCTTCTCGCCATCTCGTGCAGCAGAACATCGTTAACATTACTGTCAATAACTTAACAATTCCCTTCCCCATTCTGTGTCATTCAACACAAGATGCTCACTCTTCTGGCATTTTTTCTGGCGACTCACCCTTTTCTCACTCCTTCTCACTCTTGATGTTCAATCTCATCTTCATCACCTCCATCACCCGCATTGTTCGCATCCTTCTTAAGCCCCTCAGACAACCTTTAATCATCTCTCAGATAATAGGTGGTGTGATTGTTGGACCTTCCTTTCTGGGGCGCTGTAGATGGTTCCAGCATCACATGTCAAACGCGTCAAGCACATTCCTGGTGAACAATCTTGGAGTAATGGGATTCATGTTCTTTCTTTTCACTTACGGTGTGAAGATGGATCCAGGCCTTTTGAGAAAATCAGGGAAATTGCATGTATCTACTGCATTGATTGGCATAACAATTCCCACATTCACAGTGTTTGCTGTGTCACTATGCTTGAGAAAAAACATGGACAAAGAACTAGCCAAGATTCCTTCATTAGGAGTAATATCAGGGTACTTGGGTGTGACAGCATTCCCTGTGCTCTACCACATCCTCAAAGAGTTTAACCTTCTAAATTCAGACGTGGGGAGAGTTTCACTGGCCACAGCATTAATTGGTGATACATTTGGTTTAATTTTCATCATGGCATTTGAGGCAGCAAGTCAAGGAGAAGTAAAAATAATGAATACCGTGTGGTACGTGATTTCTCTTGCGGTTGTGGTGTCATTCCTTGTGTTTTGTGTTAGGCCTGCGATGGCATGGATCAACGACAACACTCCAGAAGGGCACCCTGTGCATGAGTCCTTTGTGTTGGCCATTATTCTAGGCTCTTTTGTGATGGGCTTCATAACTGACATGTTTGGCATAGCAATTGCTAATGGGTCCTTGTTCTTGGGCCTCACTATTCCTAATGGGCCTCGTGTGGGAGCAACAATTGTAGAGAAGACCACAACAATCACGAATGAGCTCCTCTTGCCATTCTCTTTCCTTTTGGTGGGATCACAAACTGATTTCTATGCCATGAGTGCTTCTGATTGGACCAGATTGTCACCGTTGTTTGTCATGGTTATAACTGGCTACTTCACCAAATTCTTTTCCGTTTGGATTACTCTGTACTTTTGGAGAGTGCCATTCAGAGATGGACTAACCCTCAGCCTCATTATGAGCTTAAGAGGCCAAATTGAACTTTTATTGTTTGTGCATTGGATGGACAAAAGTATCTTAAATGTGCCAGGCTTCACATTGTTGGTTCTTATGACAATCATAGTGACAGCAATTTTCACTCCTTTGATCTCCATATTATATGATCCATCAAAGCCATACATGGTGAACCAAAGGAGGGACATTCAACACAACCCTCCAGACGAAGAACTTAGGATAGTGTTATGCATTCTCGACACTGAAAACATAAATGGTCTCATTCATCTACTTGACATCTCCAATCCAACCTCAAGCAACCCCTTCTCAATTTATGTTGTTAGACTAACAGAGCTCATAGGTCGTGCCAACCCTTTGTTCTTGGACAATGAAAAGCAACAAGTTCCTCCCATGTATCAATGGACAAACACAATAAACATCCTCAAAACACATCAACAACTTAAGGGAACGTTTATGAAGCTCCATTTCTTCACATCTGTGGCACCAAAGCAGTCAATGTTCCGAGACATATGCGAGCTTGCCCTAGAACAAGAGACTTCATTAATCATCTTACCTTTCGACAGTGTTGATGTTCGCAACCATGCAGTGAAAACAGTGAACTCACAAGTGTTGAATAATGCACCTTGCTCAGTTGCAATTTTTGTTGACAAGGGTCTTTTTCAAATGAGCAACACGGGAAGTTCCTTTCGTCGAACTAGGCATCGATTTGGTTTGTTGTTTCTCGGGGGTGGAGATGCAAGAGAGGCCCTTGTTTTTGCAGATAGGATGGTTGCAAACGAAGACGTGTTCCTCACAGTTATAAGGTTTCTCTCTCACAACTTCATAGGGTACAATGAGTTGGAGAAGAAGCTTGATGATGGAACTGTGACATGGTTTTGGGTCAAGAATGAGACGAATCAAAGAGTGGCGTACAGAGAGGTGGTGGTTAGAAACGGAGAAGAAACTATTGCAGCAATTCAGGCGATGAATGATGGTGCTTTTGATCTTTTGATAGTGGGAAGGAAACAAGGGATAAACCCTGTTATTCTCACAGGGTTATCGGAATGGAGTGAAAGTGATGAGTTAGGAATCATAGGAGACTATGTTTCCTCTGAAGATTTTTTCGGCTCAGCTTCTGTTTTAGTTGTACAACAACAAATCCTAAGAGGCTGA 2412 0.4283 MTRVFPAPRLLQAPNGWHQHVNPSRHLVQQNIVNITVNNLTIPFPILCHSTQDAHSSGIFSGDSPFSHSFSLLMFNLIFITSITRIVRILLKPLRQPLIISQIIGGVIVGPSFLGRCRWFQHHMSNASSTFLVNNLGVMGFMFFLFTYGVKMDPGLLRKSGKLHVSTALIGITIPTFTVFAVSLCLRKNMDKELAKIPSLGVISGYLGVTAFPVLYHILKEFNLLNSDVGRVSLATALIGDTFGLIFIMAFEAASQGEVKIMNTVWYVISLAVVVSFLVFCVRPAMAWINDNTPEGHPVHESFVLAIILGSFVMGFITDMFGIAIANGSLFLGLTIPNGPRVGATIVEKTTTITNELLLPFSFLLVGSQTDFYAMSASDWTRLSPLFVMVITGYFTKFFSVWITLYFWRVPFRDGLTLSLIMSLRGQIELLLFVHWMDKSILNVPGFTLLVLMTIIVTAIFTPLISILYDPSKPYMVNQRRDIQHNPPDEELRIVLCILDTENINGLIHLLDISNPTSSNPFSIYVVRLTELIGRANPLFLDNEKQQVPPMYQWTNTINILKTHQQLKGTFMKLHFFTSVAPKQSMFRDICELALEQETSLIILPFDSVDVRNHAVKTVNSQVLNNAPCSVAIFVDKGLFQMSNTGSSFRRTRHRFGLLFLGGGDAREALVFADRMVANEDVFLTVIRFLSHNFIGYNELEKKLDDGTVTWFWVKNETNQRVAYREVVVRNGEETIAAIQAMNDGAFDLLIVGRKQGINPVILTGLSEWSESDELGIIGDYVSSEDFFGSASVLVVQQQILRG 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00619 803 Pfam Sodium/hydrogen exchanger family 78 465 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cca01g00619 803 PANTHER CATION/H(+) ANTIPORTER 24-RELATED 45 802 - -
Cca01g00619 803 Gene3D - 71 473 IPR038770 -
Cca01g00619 803 PANTHER CATION/H + ANTIPORTER 45 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00619 Cca-Chr1 7923719 7927555 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00619 44 800 Antiporter Super Family AT5G58460 41.593 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00619 - - gmx:100783296 1172.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00619 01 7923719 7927555 Cca01g00619 01 7923719 7927555 ECH