Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00612 ATGACCACTTCTTTCTCTGACCTTCTTTCTTCTCCCACCACCGACAACAACCTCGGAGGCTCCGAAAGACCTCTGGAGTTGTGGGATCATCAAACAGGTTCAGGTGTGCCAAAATTCAAGTCCACACCccctccctctctccctctctctcaccctccTAACAATCATTCTCTTCCACCCTTTTCTCCTTCTTACTTTTCCATCCCTCATGGGTTAAGCCTTGCTGAACTTCTTGACTCCCCGGTTCTCCTTCACTCTTCTAGCGTTTTGCCATCTCCAACAACTGGATCATTTGCTGGTCAAGGCTTCAGTTGGAAGAGCAGTTATGGGGAAAGCGAGCAACATGTCAAAGAAGAAGACAAAAGCTTCTCAAGTTTCTCCTTCCAAAAACAAACACACCCTCCTCTTCCATCTTCAACCGGATTTCAATCTTCAACCCGCATAGTTCAAAACGGATGGAGTTTTCCGGAAACTGCTAAACAAGATGGTTTTTCTTCAAGAATGAGTATGAATATGGTGAAAACTGAAACCTCTTTTGAGAATAACAACCACAAGGGTAGTTTTCAATCAGATTATAATAATTaccagccaccgccaccaccaccacAAGTTCAGACTTTAAGCAGAAGGTCAGATGATGGCTACAATTGGAGGAAATACGGGCAAAAGCAAGTGAAAGGAAGTGAAAATCCAAGAAGCTACTACAAGTGCACATACCCCAATTGCCCAACAAAGAAAAAGGTTGAAAGGTCCTTAGAGGGGCAAATTACTGAGATAGTTTACAAAGGCACTCATAACCATCCCAAGCCTCAGGCTACCAAGAGGAACTCATTGTCTGCCCCATCACTTGCAATTCCTCACTCAAATATTGTCAGCAATGAAACACCACATCAAATAATGGATTCGGTTGCCACTCCAGAAAACTCATCCATATCAATGGAAGATGATGATTTTGCTCATAGTAAATCAGGAGGAGATGAGTTTGATAATGATGAACCTGATGCCAAAAGATGGAGGATAGAAGGTGAAAATGAGGGAATATCAGCTGTAGGAAGTAGAACAGTGAGAGAACCCAGAGTTGTGGTTCAGACAACCAGTGACATCGATATTCTAGATGATGGATACAGATGGAGGAAATATGGGCAGAAAGTAGTCAAGGGAAATCCAAATCCAAGgagttactacaagtgcacattcccaggatgtccagtgagaaagcatgtagagagagcctcacatgatctaagggcagtgatcacaacctatgaggggaaacacaaccaTGACGTGCCTGCGGCACGTGGCAGTGGAAGCAACCCTATCAATAGATCATTGCCAAACAATACCACAAACAACACCACTAGTGCAGCCACTTCTACATACGCTAACAATTCTCTTCTTAGACCAGAAAGGCCATCACAGTTCAACCCCAATATGCAGCAGAACTCAGGAAGTTTTGGATTCTCAGGGTTTGGGAACCCAATGGGGTCATACATGAATCAGCAATCAGACAATGTGTTCCCCAAGGAGGAGCCTGGAGATGACTCGTTTCTTGACTCTTTGCTATGTTAA 1572 0.3861 MTTSFSDLLSSPTTDNNLGGSERPLELWDHQTGSGVPKFKSTPPPSLPLSHPPNNHSLPPFSPSYFSIPHGLSLAELLDSPVLLHSSSVLPSPTTGSFAGQGFSWKSSYGESEQHVKEEDKSFSSFSFQKQTHPPLPSSTGFQSSTRIVQNGWSFPETAKQDGFSSRMSMNMVKTETSFENNNHKGSFQSDYNNYQPPPPPPQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLEGQITEIVYKGTHNHPKPQATKRNSLSAPSLAIPHSNIVSNETPHQIMDSVATPENSSISMEDDDFAHSKSGGDEFDNDEPDAKRWRIEGENEGISAVGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSNPINRSLPNNTTNNTTSAATSTYANNSLLRPERPSQFNPNMQQNSGSFGFSGFGNPMGSYMNQQSDNVFPKEEPGDDSFLDSLLC 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00612 523 SUPERFAMILY WRKY DNA-binding domain 363 431 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g00612 523 MobiDBLite consensus disorder prediction 1 20 - -
Cca01g00612 523 MobiDBLite consensus disorder prediction 426 523 - -
Cca01g00612 523 MobiDBLite consensus disorder prediction 41 56 - -
Cca01g00612 523 MobiDBLite consensus disorder prediction 313 333 - -
Cca01g00612 523 SMART WRKY_cls 371 430 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g00612 523 SMART WRKY_cls 211 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g00612 523 Pfam WRKY DNA -binding domain 372 428 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g00612 523 Pfam WRKY DNA -binding domain 212 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g00612 523 Gene3D WRKY domain 202 271 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g00612 523 MobiDBLite consensus disorder prediction 302 333 - -
Cca01g00612 523 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 29 461 IPR044810 GO:0003700
Cca01g00612 523 MobiDBLite consensus disorder prediction 437 507 - -
Cca01g00612 523 MobiDBLite consensus disorder prediction 1 56 - -
Cca01g00612 523 MobiDBLite consensus disorder prediction 116 143 - -
Cca01g00612 523 ProSiteProfiles WRKY domain profile. 212 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g00612 523 MobiDBLite consensus disorder prediction 125 143 - -
Cca01g00612 523 Gene3D WRKY domain 358 424 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g00612 523 SUPERFAMILY WRKY DNA-binding domain 210 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g00612 523 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 29 461 - -
Cca01g00612 523 MobiDBLite consensus disorder prediction 180 210 - -
Cca01g00612 523 ProSiteProfiles WRKY domain profile. 366 431 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00612 Cca-Chr1 7821241 7824374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00612 209 522 WRKY Transcription Factor Family AT2G38470 55.263 1.66e-104 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca01g00612 WRKY 2.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00612 K13424 - gmx:100127397 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00612 01 7821241 7824374 Cca01g00612 01 7821241 7824374 ECH
Cca01g00612 01 7821241 7824374 Cca05g01323 05 31099366 31103155 PCT