Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00609 ATGCATACCGCAAATATTCAAACACTCGTAGAACTTGAAAGTGCCCTACCAAATATTGGGTCACTAAGAGGTTTGGAAGTAATTGATGAAATTAAAGCAGCAGTTGACAAAGCTTGCAAACGTCCTGTAGTATCATGTGCTGATATCTTAGCTATAGCTGCTCGTGATTCTGTCTCCATATTGGGAGGGTCACTCTACTGGTACAAAGTTTTACTAGGCAGAAGGGATGCAACAACTGCTAGCAAGGATGCTGCAAACTCAAATCTTCCTCCTCCATTTTTCACTTTCTCTCAGCTTCTTTCTAGTTTTCAGTCTCATGGTTTGGACCTCAAAGACCTCGTAGCTCTTTCTGGTGCTCACACCATTGGATTTGCCCAATGCTCCACCTTTAGGAACAGGATCTACAATGATACCAACATAGACCCCAACTTTGCATCTTCTTTGCAGGGCACGTGCCCTAGAAGTAGTGGTGGAGATAGCAATCTGGCAGCATTGGATCGTGCCACTCCCTCAAGATTTGACACTTCATTCTATTCTGCATTGCTGAGTAAAAAGGGTCTACTTCATTCCGATCAAGAGCTCTTCAAAGGAGATGGTGGTGAAAGTGACAATTTGGTGAAGCTATACAGCAAGAACCCTTTTGCTTTTGCTAGGGATTTTAAGGCTTCCATGGTCAAGATGGGTAACATGAAGACTCTTACTGGGAGTGTTGGAGAGATCAGAAACAATTGTAGAAGAATCAACTAA 747 0.4284 MHTANIQTLVELESALPNIGSLRGLEVIDEIKAAVDKACKRPVVSCADILAIAARDSVSILGGSLYWYKVLLGRRDATTASKDAANSNLPPPFFTFSQLLSSFQSHGLDLKDLVALSGAHTIGFAQCSTFRNRIYNDTNIDPNFASSLQGTCPRSSGGDSNLAALDRATPSRFDTSFYSALLSKKGLLHSDQELFKGDGGESDNLVKLYSKNPFAFARDFKASMVKMGNMKTLTGSVGEIRNNCRRIN 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00609 248 SUPERFAMILY Heme-dependent peroxidases 10 248 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca01g00609 248 Gene3D - 13 248 - -
Cca01g00609 248 CDD secretory_peroxidase 15 247 IPR033905 GO:0004601|GO:0042744
Cca01g00609 248 Gene3D Peroxidase, domain 2 90 227 - -
Cca01g00609 248 Pfam Peroxidase 12 211 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g00609 248 PRINTS Plant peroxidase signature 23 36 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00609 248 PRINTS Plant peroxidase signature 43 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00609 248 PRINTS Plant peroxidase signature 111 123 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00609 248 PRINTS Plant peroxidase signature 164 179 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00609 248 PRINTS Plant peroxidase signature 180 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00609 248 PRINTS Plant peroxidase signature 222 235 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00609 248 PRINTS Haem peroxidase superfamily signature 44 61 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g00609 248 PRINTS Haem peroxidase superfamily signature 64 76 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g00609 248 PRINTS Haem peroxidase superfamily signature 112 127 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g00609 248 PRINTS Haem peroxidase superfamily signature 166 181 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g00609 248 PANTHER PEROXIDASE 72-RELATED 8 247 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00609 248 ProSiteProfiles Plant heme peroxidase family profile. 1 248 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g00609 248 ProSitePatterns Peroxidases proximal heme-ligand signature. 112 122 IPR019793 -
Cca01g00609 248 PANTHER CATIONIC PEROXIDASE 8 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00609 Cca-Chr1 7796510 7798458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00609 13 248 Peroxidase AT5G05340 57.806 1.54e-87 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00609 K00430 - gmx:100816580 401.364