Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00606 ATGGCAAATCTAAAGACACCCCTTGTCCTTGAAATGAAGGATGTTGTGATAGTTAAACCCTCCAAGCCCACACCATCTTTAGTTCTTTCACTGTCCACCATTGACAGTGATCCAGTTCTCAACATTCTGTGTCATACCATTTATGTATACCAAGCAAATCATGATTCTCCGAATGGCCAACTAGACCCTTCTCATGTGATAAAAGAAGCCCTCTCAAAGGCTTTGGTTTACTATTACCCTCTTGCAGGGAAGATAGTAACATTGGTGGATGATGGAAAACTTGGAATCAACTGCAATGCTGATGGAGTTCCATTCTTGGAGGCAACTGCTAACTGTGAACTCTCTTCTCTTCACTATCTTGAAGGGATTGATGTTCCAACGGCACAGAAATTAGTGTTTGATCATAACCCTTCTCAAGATGAGACTAGTCACCACCCGTTGGCTTTCAAGGTGACCAAGTTTCTCTGTGGGGGTTTCACCATTGGAATGGGCTTATCACACAGTGTTTGTGATGGGTTTGGTGCATCTCAATTCTTCAGAGCCTTGGCTGAACTTGCATGTGGGAAAAGTGAGCCCTCGGTGAAACCTGTGTGGGAAAGAGAAAGGCTAATGGGGACACTTCTCAAAGAGCCACTCGAATTTCCCATAGATGAGACTTCAAGGGCTTTTTCACCATTTTGGCCAACTAAGGAGATTTCACATGAATGCTTTAACTTGAACGGTAAGAGCATACAGAGACTCAAGATGGAACTGATGAAGGAAAGTGATGATGTGAAGGAAAGCTTCACAACTGTTGAAGCACTTGGTGCCTATGTTTGGAGGTCTAGGGCAAGAGCTTTGGAATTGAACTCTGATGGGAAAACTTTATTGTGTTTAACAGTAGGGGTGAGACGCATATTGGATCCACCTTTGCCTGAAGGGTATTATGGTAATGCTTTTGTGGGTTCAGCTGTGGTGCAAACAATGAAAGAACTTGATGAAAGACCACTCTCGGAGGTTGTGAAGCTCATTAAAGAGAGCAAAAAGCTTCCTTCTAATGAGTACATCAGAAACTCAATAAACATGTTGGAGACAATGAGAGAAAGGAACATTAGGATTGAAGGAACATGTGCCTCTGTGGTGTTAACAGATTGGAGGCAGCTGAGTTTGTTGGAAGAAGTGGATTTTGGATGGAAGCGTTCTGTGAATATAGTACCAGTTCCATGGAACATGTTTGGCTATGTGGACTTGTGCCTTTTCTTGCCTCCTAGTAACTTGGATTCTTCAATGAAAGGAGGAGTTAGGGTCTTTGTTTCCCTCCCCAAAGCTTCGATGCCCAAGTTCAAGGAGGAGATGGAGGCCCTCAAGCTTATGAGTGGTGATGAAAGTAGCATCTAG 1377 0.4336 MANLKTPLVLEMKDVVIVKPSKPTPSLVLSLSTIDSDPVLNILCHTIYVYQANHDSPNGQLDPSHVIKEALSKALVYYYPLAGKIVTLVDDGKLGINCNADGVPFLEATANCELSSLHYLEGIDVPTAQKLVFDHNPSQDETSHHPLAFKVTKFLCGGFTIGMGLSHSVCDGFGASQFFRALAELACGKSEPSVKPVWERERLMGTLLKEPLEFPIDETSRAFSPFWPTKEISHECFNLNGKSIQRLKMELMKESDDVKESFTTVEALGAYVWRSRARALELNSDGKTLLCLTVGVRRILDPPLPEGYYGNAFVGSAVVQTMKELDERPLSEVVKLIKESKKLPSNEYIRNSINMLETMRERNIRIEGTCASVVLTDWRQLSLLEEVDFGWKRSVNIVPVPWNMFGYVDLCLFLPPSNLDSSMKGGVRVFVSLPKASMPKFKEEMEALKLMSGDESSI 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00606 458 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 5 449 - -
Cca01g00606 458 Pfam Transferase family 11 447 - -
Cca01g00606 458 Gene3D - 8 211 IPR023213 -
Cca01g00606 458 Gene3D - 228 445 IPR023213 -
Cca01g00606 458 PANTHER ACYL TRANSFERASE 4 5 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00606 Cca-Chr1 7755888 7757310 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00606 10 443 Monolignol Biosynthesis Gene Families AT5G48930 26.711 8.73e-38 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00606 K20240 - gmx:100801843 823.157