Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00604 ATGGCACCTCAAAAGGAACCTTTCAAGCTTACCTTGAAAGAAGTTGTACTCATCAAACCATCCAAACCAACACCTTCTTCCATTCTTTCTCTGTCTACACTTGACAACATACCCGATCTTAATAGCCTGTGCCAAACCGTTCATGTATACAGATCAAGATCTACATTTCATGATTCTGAACTAGGTTGCCCTAATGACCAACTACTACAAGACCCTGCTCATGTGATCAAAGAAGCACTCTCAAAGGCTTTGTTTTATTACTACCCTCTTGCAGGTAGGTTACTAAAGAACACTGATGGGAAGCTTAGAATCAATTGCAATGCAGATGGTGTTCCATTCTTGGAAGCAAATGCTAGTTGCCACCTTTCTTCTATTCATTACTTGGATGGCTCTAACATGGAAAGTGCAAAACACTTGGTGTTTGATCTTCCTACTTATGATGAAAGTGGCTACCCCTTGGTGTTCAAGGTGACAAAGTTTCCTTGTGGTGGCTTCACAATTGGAATGGGGCTGTCACATGCTGTTTGTGACGGTGTTGGAGCCTCTCAATTCTTGAGAGCCATCATTGATTTTGCAAGAGGGAAAAAAGAGCCCGCAGTGAAGCCTGTGTGGGAGAGAGAGAGGCTAGTGGGAACAATCACCAAACAGCCCTTGCAAATTGATTATGTGGATGAGACTTCAGCTGCAGTTTCACCTTTTTTGCCAACAAAACTTCTCATGCATGAGTGCATCAAGGTGGACAGTGAGAGCATCACAAGGCTCAAGATGAGTTTGATGAAGGAAGGTGACATTGGTGAAAGCTTCACAGGTTTTGAATCACTTGCTGCATATGTGTGGAGGTCAAGAGTTAGGGCCCTAAAACTGAGCCATGATGGGAGGATTATGCTGAACATCACAGTTGGGGTGAGAAGACAGATGCTGGATCCTCCTTTGCCTGAAGGGTACTATGGGAATGCAATTGTGGATGCTGATATTATCTTAACAGTGAGGGAACTCAATGAAAAGCCACTCCATGAGGTTGTGAGGCTCATCAGAGAAAGCAAGAGGGTTGCTTGCAATGTTGATTATGTGAGAAAATACATCAACACTTTAGAGACGGAACAAGAGGATTTGGATGTTAAAGGAAGTGGTGCATTCTTCACTATGACTGATTGGAGGCACTTGGGGTTCTTGGAAAATTTGGATTTTGGATTTGAGGAACTTGTGAATACTGTACCTGCTCCATGTGACATGTTTGGGTCGGTTGATTTGTGCATTTTCTCTTCTCTTAGCAAATTGGATTCTTCTATGAAAGGAGGGGTTAGGATTTTTGTGTCCCTCCCTTGTGATGCCATGATCAAGTTCAAGGAGGAAATGGAGGCTCTAAGCTTTTTCAATTGA 1380 0.4297 MAPQKEPFKLTLKEVVLIKPSKPTPSSILSLSTLDNIPDLNSLCQTVHVYRSRSTFHDSELGCPNDQLLQDPAHVIKEALSKALFYYYPLAGRLLKNTDGKLRINCNADGVPFLEANASCHLSSIHYLDGSNMESAKHLVFDLPTYDESGYPLVFKVTKFPCGGFTIGMGLSHAVCDGVGASQFLRAIIDFARGKKEPAVKPVWERERLVGTITKQPLQIDYVDETSAAVSPFLPTKLLMHECIKVDSESITRLKMSLMKEGDIGESFTGFESLAAYVWRSRVRALKLSHDGRIMLNITVGVRRQMLDPPLPEGYYGNAIVDADIILTVRELNEKPLHEVVRLIRESKRVACNVDYVRKYINTLETEQEDLDVKGSGAFFTMTDWRHLGFLENLDFGFEELVNTVPAPCDMFGSVDLCIFSSLSKLDSSMKGGVRIFVSLPCDAMIKFKEEMEALSFFN 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00604 459 Pfam Transferase family 9 454 - -
Cca01g00604 459 Gene3D - 236 452 IPR023213 -
Cca01g00604 459 PANTHER ACYL TRANSFERASE 4 6 456 - -
Cca01g00604 459 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 6 456 - -
Cca01g00604 459 Gene3D - 5 221 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00604 Cca-Chr1 7740505 7742081 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00604 9 398 Monolignol Biosynthesis Gene Families AT5G48930 29.512 3.69e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00604 K20240 - gmx:100801843 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00604 01 7740505 7742081 Cca01g00604 01 7740505 7742081 ECH