Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00602 ATGCCTTCTTCTACTCTTCAATGGTTAAGCCTTGTTGGCATCATTTGGCTCCAAGCCATAATTGGGACCAACACCAATTTCCCTGCATACTCTTCTCAGTTGAAAGAGCTTCTTTCCATCTCCCAAGTGCAGCTCAATAACCTTGCTTTTGCCTCTGATGCAGGCAAACTTTTTGGCTGGTTTTCTGGCCTTGCTTCTATTTACCTCCCCCTATGGCTTGTCCTCTTGATTGGTTCAACTCTAGGGTTGATTGGTTATGGTGTGCAATATCTCTTCATAACCAACGTAATCTCCTCTTTGTCCTATTGGCATGTCTTTTTGCTAACTTTTCTTGCTGGCAATAGCATTTGTTGGATCAACACAGTGTGCTATGTTGTCACCATAAGGAACTTCCTATCTGATCGCCAAGCTGCAGTGGGAATAACAACCAGTTATCAAGGATTAAGTGCAAAGATTTATGCCAACATTGTTGATGCTGTTGCGCCTCACAAGAAAGCTAGAACATTCCTCTTCTTGAACTCTCTCTTACCTTTGATAGTTGGCCTAATAGCAGCTCCTCTTGTCAGAGAAATTGAATTCACAGGTCCTAATTACAAGGGTGTTGGGTTTGCTGTGATGTTCGCCATAACCATTTCAACCGGAATATATGCTGTATTTAGCAGTTTGCAATTTGTCACAAACAAAGCATCCTCACTTGGTATCTTGATTGGTATTCTGGTATCTCTTGTCTTGCCTCTACTAGTGCCACTTTTAGTGAAGATCAAGGAGATAGAGAACAATAGAGAAAAATTGAGAGTATGTGATTTTACTATGGAGGACAATACTAACGAAGCGGGGGAAGGGAATGAGGTGAAAGATGAAGATGATGTAGAAGTTCAAGAATATGTTGTTGGCATTATTGAAGAAGTTGGAGTCAAGTTGATGTTGAGAAGAATAAATTTCTGGTTATATTTCTTGATCTACTTTTTTGGTGCAACAGTTGGTTTAGTATATCTTAATAACTTGGGACAAATAGCTGAATCCCGCGGTTGCTATGGTACTTCATCTTTGGTGTCTTTGTCTTCATCATTTGGATTCTTTGGACGTCTCATGCCATCTCTTATGTACTACTTCTACAGGGGGAAGTGTAAAGTTTCAAGACCTGCTTCCATATTGGCAGTGATGGTTCCAACATCTGGTGCATTTTTCTTACTTCTCAACAAATCTGACCTAGCACTATACATCAGTACTGCAGTGATTGGAGTGTGCACTGGAGCAATAACTTCCCTTGCTGTTTCCACAACCACTGAGCTATTCGGTACTAAACATTTCTCAGTGAACCATAATGTGGTGGTGGCCAACATTCCCATAGGGTCCTTTGTATTTGGCTACACAGCTGCACTTTTTTACCGTAAggaagggaatgagaatgggaaatgcatgggcatggaatgCTACAGAAACACTTTTATTATGTGGGGCTCTTTTTGTCTCCTTGGAACTCTTTTGGCTTTGATTCTACATGCTAGGACTCGTAAATTGTACTCACAAAATCAATAG 1539 0.3957 MPSSTLQWLSLVGIIWLQAIIGTNTNFPAYSSQLKELLSISQVQLNNLAFASDAGKLFGWFSGLASIYLPLWLVLLIGSTLGLIGYGVQYLFITNVISSLSYWHVFLLTFLAGNSICWINTVCYVVTIRNFLSDRQAAVGITTSYQGLSAKIYANIVDAVAPHKKARTFLFLNSLLPLIVGLIAAPLVREIEFTGPNYKGVGFAVMFAITISTGIYAVFSSLQFVTNKASSLGILIGILVSLVLPLLVPLLVKIKEIENNREKLRVCDFTMEDNTNEAGEGNEVKDEDDVEVQEYVVGIIEEVGVKLMLRRINFWLYFLIYFFGATVGLVYLNNLGQIAESRGCYGTSSLVSLSSSFGFFGRLMPSLMYYFYRGKCKVSRPASILAVMVPTSGAFFLLLNKSDLALYISTAVIGVCTGAITSLAVSTTTELFGTKHFSVNHNVVVANIPIGSFVFGYTAALFYRKEGNENGKCMGMECYRNTFIMWGSFCLLGTLLALILHARTRKLYSQNQ 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00602 512 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 3 511 - -
Cca01g00602 512 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 3 511 - -
Cca01g00602 512 SUPERFAMILY MFS general substrate transporter 8 506 IPR036259 -
Cca01g00602 512 Pfam Nodulin-like 7 252 IPR010658 -
Cca01g00602 512 CDD MFS_Mch1p_like 6 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00602 Cca-Chr1 7708925 7711358 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00602 1 511 Nodulin-like Gene Family AT2G30300 48.948 6.66e-149 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00602 - - gmx:100793370 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00602 01 7708925 7711358 Cca01g00602 01 7708925 7711358 ECH
Cca01g00602 01 7708925 7711358 Cca05g01330 05 31296352 31298468 PCT