Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00601 ATGCATGTAATCATACTTGGGAAAAGTGCAGCTAATGAGAGTTCTGATGTTAAGGGCATAATAGGAGTTATTATAGATAGCAGTTCTCGCATAGGCCAAGAGCATGCAGTGGCTATAAATCTGGCATTGGAAGACTTTTATCGAAAAAACAATCTGAGTTTTGCTCTGCATATAAGAAGCTCTCAAGGAGATCCTCTTTTGGCAGTTATTGCAGCGAGGGATCTCATTGATAATCAAAAGGTGCAAGCAATCATTGGACCACAAACATGGGCTGAGACATCTTTAGTGGCTGAAGTCTGTAGCCAAAAGAGCATACCCCTCCTTTCTCTAGCAGATACAACTCCAGAATGGGCAATGCGGAAGTGGCACTTCCTGCTTCAATCCTCACCTAGCCAAATTATGCAGATGAAAGCTATAGCTGAGATTGTGAAGTCTTGGGAACTCTATAATGTTAGCATGATATATGAAGATGGAGACTCATCATTTACTGAAGTTTTATCTCAGCTCTCTGGAGCTCTTACAAAAGTTGGCACAAAATTAAACAATGTTCTAGCAATTGCACCTCTAGTTTCTTCTctttga 582 0.4021 MHVIILGKSAANESSDVKGIIGVIIDSSSRIGQEHAVAINLALEDFYRKNNLSFALHIRSSQGDPLLAVIAARDLIDNQKVQAIIGPQTWAETSLVAEVCSQKSIPLLSLADTTPEWAMRKWHFLLQSSPSQIMQMKAIAEIVKSWELYNVSMIYEDGDSSFTEVLSQLSGALTKVGTKLNNVLAIAPLVSSL 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00601 193 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 192 - -
Cca01g00601 193 SUPERFAMILY Periplasmic binding protein-like I 20 186 IPR028082 -
Cca01g00601 193 Gene3D - 19 188 - -
Cca01g00601 193 Pfam Receptor family ligand binding region 37 179 IPR001828 -
Cca01g00601 193 PANTHER GLUTAMATE RECEPTOR 12 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00601 Cca-Chr1 7678198 7679642 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00601 21 159 Ion Channels AT3G04110 33.333 1.14e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00601 - - gmx:100776939 322.013