Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00598 ATGTCTTTCGCAACTTTCTTCACCACTCCTTCTTCTTCTCATCAATGGCTAAGCCTTGTAGGCATCATTTGGCTCCAAGCCATAAGTGGAACAAACACTAATTTTCCTGCTTACTCTTCCCAGCTGAAACAGCTTCTTTCCATCTCCCAAGTGCAGCTCAATAACCTTGCCTTTGCCTCTGATGCAGGCAAACTTTTTGGCTGGATTTCTGGCCTTGCTTCCATTTATCTCCCTCTATGGCTTGTTCTCTTCATTGGTTCAACTCTAGGGTTAATTGCTTATGGTGTGCAATATCTCTTCATAACCAACCATATTTTCTCTTTGTCCTATTGGCATATTTTTTTACTAACTTTCCTTGCTGGCAATAGCGTTTCTTGGATCAACACAGTGTGCTATGTTGTCACCATAAGGAACTTCCCATCTGAAGGTCAAGTTGCTTTGGGAATAACAACTAGTTATCAAGGACTAAGTGCAAAGGTTTATACCAACATAGTTGGAGCTTTTTCTCCACACCACAAGGCTAGAACCTTTCTCTTCCTTAACTCACTCTTGCCCTTTACAGTTTCCCTTTTAGCAGCTCCTCTAGTCAGAGAATTTAAAGCCACAGGTCCTAAGAACAGTAGTATTGGATTTGCTTTATTGTTTGTTATTACAGTTGTCACAGGAATATATGCTGTGATGAGCAGCTTGCAATTTGTCACGAGAAAAATATCTTCTTTGGCCATCCTGATTGGTATTCTAGTGTCCCTTTTTTTGCCTCTAGTCGTCCCAGTTTCTTTGAAATTCAAGGAAGTTGGATCATGGAACACAAATAGAGTGAGACACATTAGAATCCAAAATATTTTTCATGGGGAAAACACTAATAAGGAGAGGATAGAAAATAATGAGGTGAAAGATGAAGGAGAAGATAGCAGAGAAGTTCAAGTGGTTGCTGTGAGAGAAGAAATTGGAGTGAAGTTGTTGCTTAGAAGAATAGATTTCTGGTTGTATTTCTTGGTATACTTTTCTGGAGCAACGATTGGTTTAGTGTTTCTTAATAACTTGGGACAAATAGCTGAATCCAGGGGATACTCTGGTACTTCATCTTTGGTGTCATTGTCTTCATCTTTTGGGTTTTTTGGCCGTCTCATTCCATCATATTTGGACTACTTCTACAGGGGAAAGTGCAGAATTTCAAGACCTGCTACTATATTGGCAGTGATGGTTCCAACAACAGGTTCATTTTTCTTACTTCTCAACAAAACTGACCTTGCACTATACATCAGCACTGCGGTGATTGGAGTGTGCACTGGAGCAATCACTTCCATTGCTGTTTCCACAACCACTGAGCTATTTGGCACTGAGAATTTTGCAGTGAACCATAATTTGGTGGTGGCCAACATTCCAATTGGCTCGTTTTTGTTTGGCTACTCAGCAGCACTTCTATACAATAAGGAAGGACATGAACATGGAAATAGACATGGAAATTGCATGGGCATGGAATGCTATAGAAACACATTTTATATGGGGTTGCTTTTGTTTCTTTTGCACCTTATTGGCTTTGATTCTACATGCAAGGACCCGAAAGTTTTACTCACACGGGATAAGCTTATTGGAAATAAAGAGGCAGCTCCTCGACCTCTAGCAGTCGATCTTATACAGCACaatctgttccgaatcgaatttgaggatggaaatcggttaaagccgaagtgttttatcagtgatgagtgtggtcgttacgggcatgtggCTCGCCAATGTGCTGTTCAAGGTTTGGATGGTGTAGAGAGAGAGGGAGAGGTTCCTCGGGAGGCTCCGCCGGCAACTGACGTACATTCACATACTCAAACAGTGGATTTCGATGCTGATGGGGTCCACGGGGATTGGATGGTGGTTACGAAATTCAAACGGGGAGACAAATATAAAGGCGTTACAGGTGGCGAGAATAAATGGGGATATAAAGGAGGGGATTCTCAATTTAAGTTTAAAAATAATCCGTTCCAAGTATTACGGAGAGAAAAGGATACGAATCAGGGGCCAATGAATGCTGATTATTTGAATACAACAATATTTTCAGGTACCGAGAATCAGGGATCCACTCCTGAGCGGCACTTTGTGGATCATACCTCGAAAGTGTGGACAAAGAGTAAGGGTAAACGTTCGAGACATGAGCCAGCGGAGTCAACGGAGGAGGGGTCGTCGTCGCAAACAATGGCTATGAAGAAAACTGTGAACTGTTTGAAGAATCAAACGGTGTCTATTCCCTTGACTAGTGCTCATGCACACGTAAAAACTGGTATGAAACCACTACATACACACATGCAACCACCATACAGCTCGTATGTACAAAGTTTTGGAGATCCACCGCAACCTCATATTATTCCGCAACATGCACCGAGACCCCCTGATGACGCTTTGCCAGCTGATGGGGTTACAGTAGGTGATGGAGTGGATCACAATTCTGACGGAGTTGCTTTGGAGGAAGATATGGACGTTGGAGAAGATGTTGCGCCTCACCCTCAGAAGTAG 2511 0.409 MSFATFFTTPSSSHQWLSLVGIIWLQAISGTNTNFPAYSSQLKQLLSISQVQLNNLAFASDAGKLFGWISGLASIYLPLWLVLFIGSTLGLIAYGVQYLFITNHIFSLSYWHIFLLTFLAGNSVSWINTVCYVVTIRNFPSEGQVALGITTSYQGLSAKVYTNIVGAFSPHHKARTFLFLNSLLPFTVSLLAAPLVREFKATGPKNSSIGFALLFVITVVTGIYAVMSSLQFVTRKISSLAILIGILVSLFLPLVVPVSLKFKEVGSWNTNRVRHIRIQNIFHGENTNKERIENNEVKDEGEDSREVQVVAVREEIGVKLLLRRIDFWLYFLVYFSGATIGLVFLNNLGQIAESRGYSGTSSLVSLSSSFGFFGRLIPSYLDYFYRGKCRISRPATILAVMVPTTGSFFLLLNKTDLALYISTAVIGVCTGAITSIAVSTTTELFGTENFAVNHNLVVANIPIGSFLFGYSAALLYNKEGHEHGNRHGNCMGMECYRNTFYMGLLLFLLHLIGFDSTCKDPKVLLTRDKLIGNKEAAPRPLAVDLIQHNLFRIEFEDGNRLKPKCFISDECGRYGHVARQCAVQGLDGVEREGEVPREAPPATDVHSHTQTVDFDADGVHGDWMVVTKFKRGDKYKGVTGGENKWGYKGGDSQFKFKNNPFQVLRREKDTNQGPMNADYLNTTIFSGTENQGSTPERHFVDHTSKVWTKSKGKRSRHEPAESTEEGSSSQTMAMKKTVNCLKNQTVSIPLTSAHAHVKTGMKPLHTHMQPPYSSYVQSFGDPPQPHIIPQHAPRPPDDALPADGVTVGDGVDHNSDGVALEEDMDVGEDVAPHPQK 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00598 836 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 11 502 - -
Cca01g00598 836 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 11 502 - -
Cca01g00598 836 CDD MFS_Mch1p_like 14 500 - -
Cca01g00598 836 Gene3D MFS general substrate transporter like domains 286 512 IPR036259 -
Cca01g00598 836 MobiDBLite consensus disorder prediction 783 836 - -
Cca01g00598 836 MobiDBLite consensus disorder prediction 706 723 - -
Cca01g00598 836 MobiDBLite consensus disorder prediction 815 836 - -
Cca01g00598 836 Pfam Nodulin-like 15 258 IPR010658 -
Cca01g00598 836 MobiDBLite consensus disorder prediction 706 732 - -
Cca01g00598 836 SUPERFAMILY MFS general substrate transporter 10 512 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00598 Cca-Chr1 7600765 7606985 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00598 16 505 Nodulin-like Gene Family AT2G30300 46.493 2.06e-129 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00598 - - gmx:100800763 691.034