Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00597 ATGGCTTCTTGTCTTCAATATTTCATTGTGTTTGCCATGGCCACACTTGTCACGATCCCTTCTCATGCACAACTCACTCCTGAATTTTACGACAAAGTTTGCCCTCAGGCACTGCCTATCATTGAGTCAGTTGTTCAACGAGCAATATTCCGTGAACGACGCATGGGAGCATCTTTACTTCGCTTGCATTTCCATGACTGTTTTGTCAATGGCTGTGATGGATCAGTTCTGCTAGATGACACCCCGAACTTGACCGGGGAGAAGAGTGCCCTACCAAATATTGGGTCACTAAGAGGTTTGGAAGTAATTGATGAAATTAAAGCAGCAGTTGACAAAGCTTGCAAACGTCCTGTAGTATCATGTGCTGATATCTTAGCTATAGCTGCTCGTGATTCTGTCTCCATATTGGGAGGGTCACTCTACTGGTACAAAGTTTTACTAGGCAGAAGGGATGCAACAACTGCTAGCAAGGATGCTGCAAACTCAAATCTTCCTCCTCCATTTTTCACTTTCTCTCAGCTTCTTTCTAGTTTTCAGTCTCATGGTTTGGACCTCAAAGACCTCGTAGCTCTTTCTGGTGCTCACACCATTGGATTTGCCCAATGCTCCACCTTTAGGAACAGGATCTACAATGATACCAACATAGACCCCAACTTTGCATCTTCTTTGCAGGGCACGTGCCCTAGAAGTAGTGGTGGAGATAGCAATCTGGCAGCATTGGATCGTGCCACTCCCTCAAGATTTGACACTTCATTCTATTCTGCATTGCTGAGTAAAAAGGGTCTACTTCATTCCGATCAAGAGCTCTTCAAAGGAGATGGTGGTGAAAGTGACAATTTGGTGAAGCTATACAGCAAGAACCCTTTTGCTTTTGCTAGGGATTTTAAGGCTTCCATGGTCAAGATGGGTAACATGAAGACTCTTACTGGGAGTGTTGGAGAGATCAGAAACAATTGTAGAAGAATCAACTAA 972 0.4403 MASCLQYFIVFAMATLVTIPSHAQLTPEFYDKVCPQALPIIESVVQRAIFRERRMGASLLRLHFHDCFVNGCDGSVLLDDTPNLTGEKSALPNIGSLRGLEVIDEIKAAVDKACKRPVVSCADILAIAARDSVSILGGSLYWYKVLLGRRDATTASKDAANSNLPPPFFTFSQLLSSFQSHGLDLKDLVALSGAHTIGFAQCSTFRNRIYNDTNIDPNFASSLQGTCPRSSGGDSNLAALDRATPSRFDTSFYSALLSKKGLLHSDQELFKGDGGESDNLVKLYSKNPFAFARDFKASMVKMGNMKTLTGSVGEIRNNCRRIN 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00597 323 Pfam Peroxidase 42 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g00597 323 Gene3D Peroxidase, domain 2 165 302 - -
Cca01g00597 323 SUPERFAMILY Heme-dependent peroxidases 24 323 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca01g00597 323 PANTHER PEROXIDASE 72-RELATED 2 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00597 323 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Cca01g00597 323 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00597 323 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00597 323 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00597 323 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00597 323 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00597 323 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00597 323 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00597 323 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00597 323 PANTHER CATIONIC PEROXIDASE 2 322 - -
Cca01g00597 323 ProSiteProfiles Plant heme peroxidase family profile. 24 323 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g00597 323 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Cca01g00597 323 CDD secretory_peroxidase 24 322 IPR033905 GO:0004601|GO:0042744
Cca01g00597 323 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g00597 323 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g00597 323 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g00597 323 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g00597 323 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g00597 323 Gene3D - 28 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00597 Cca-Chr1 7573102 7575625 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00597 22 323 Peroxidase AT5G05340 58.416 2.30e-121 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00597 K00430 - gmx:100816580 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00597 01 7573102 7575625 Cca01g00597 01 7573102 7575625 ECH
Cca01g00597 01 7573102 7575625 Cca05g01336 05 31379663 31382567 PCT