Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00595 ATGGGTGTTTCTCCTTTTCGGACTTGTAATTCTTCTTCAGCCATTGTTGTTGCATTAGTTGTGTTGCTGTTTCTTGCTGGGACCTCTTCGGCAAATCTCTCAAACAACTTCTATTCTAAGAAGTGTCCCAATGTTTTCAGAACTGTAAAATCTGTTGTTAAATCTGCTGTGGCCAAAGAACCTCGCATTGGAGCATCTATTCTTCGTCTCTTCTTCCATGACTGCTTTGTTGATGGGTGTGATGGGTCATTACTACTTGATGACACTCCATCGTTCCAAGGAGAGAAGACTGCAGCAGCTAACAACAATTCTGTGAGAGGTTTTGAAGTAATTGATGATATAAAGTCTAAGGTTGAGAAATTATGCCCTCGTGTTGTCTCATGTGCTGATATCTTGGCCATTGCTTCTCGTGACTCTGTTGTGCTCCTTGGAGGGCCTTTTTGGAAAGTAAAAGTTGGAAGAAGGGATTCTAGGACAGCAAATTTCACAGCTGCAAACACTGGTGTTATTCCACCTCCAACATCTAACCTCAGCAACCTTATCACAACTTTCAGGAATCAAGGGCTCTCTGTTAGGGACATGGTTGCCTTATCTGGATCTCACACAATTGGCAAAGCAAGGTGTACTAGCTTCAGAAGCCGCATATACAATGAGAGTAACATTGACAGAACATTTGCATTGGCCAGGCAGAGGAGGTGTCCAAGGACTAATGGCACAGGAGACAACAACCTAGCAGTTCTAGACTTCAGAACTCCAAACCACTTTGACAACAACTACTACAAGAACCTCCTCATCAAAAGGGGACTCCTCCATTCTGATCAAGTTCTATTCAGTGGTGGATCCACTGATTCATTGGTCAGAACTTATAGCCAGAACAACAAGGCCTTTGATTCTGACTTTGTTGCTGCAATGATCAAGATGGGGAATAACAAACCCTTAACTGGCTCACAAGGGGAGATTAGGAGGAACTGCAGGAGAGTGAATTAA 987 0.4316 MGVSPFRTCNSSSAIVVALVVLLFLAGTSSANLSNNFYSKKCPNVFRTVKSVVKSAVAKEPRIGASILRLFFHDCFVDGCDGSLLLDDTPSFQGEKTAAANNNSVRGFEVIDDIKSKVEKLCPRVVSCADILAIASRDSVVLLGGPFWKVKVGRRDSRTANFTAANTGVIPPPTSNLSNLITTFRNQGLSVRDMVALSGSHTIGKARCTSFRSRIYNESNIDRTFALARQRRCPRTNGTGDNNLAVLDFRTPNHFDNNYYKNLLIKRGLLHSDQVLFSGGSTDSLVRTYSQNNKAFDSDFVAAMIKMGNNKPLTGSQGEIRRNCRRVN 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00595 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 193 203 IPR019793 -
Cca01g00595 328 Gene3D - 36 325 - -
Cca01g00595 328 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g00595 328 PRINTS Haem peroxidase superfamily signature 126 143 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g00595 328 PRINTS Haem peroxidase superfamily signature 144 156 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g00595 328 PRINTS Haem peroxidase superfamily signature 193 208 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g00595 328 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g00595 328 PANTHER PEROXIDASE 72-RELATED 13 327 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00595 328 CDD secretory_peroxidase 32 327 IPR033905 GO:0004601|GO:0042744
Cca01g00595 328 Pfam Peroxidase 49 292 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g00595 328 ProSiteProfiles Plant heme peroxidase family profile. 32 328 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca01g00595 328 SUPERFAMILY Heme-dependent peroxidases 32 328 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca01g00595 328 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00595 328 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00595 328 PRINTS Plant peroxidase signature 106 119 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00595 328 PRINTS Plant peroxidase signature 125 135 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00595 328 PRINTS Plant peroxidase signature 144 159 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00595 328 PRINTS Plant peroxidase signature 192 204 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00595 328 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00595 328 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00595 328 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca01g00595 328 ProSitePatterns Peroxidases active site signature. 64 75 IPR019794 GO:0004601
Cca01g00595 328 Gene3D Peroxidase, domain 2 171 307 - -
Cca01g00595 328 PANTHER PEROXIDASE 13 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00595 Cca-Chr1 7523298 7527958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00595 9 328 Peroxidase AT5G58400 65.015 2.39e-151 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00595 K00430 - gmx:100813384 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00595 01 7523298 7527958 Cca01g00595 01 7523298 7527958 ECH
Cca05g01339 05 31419607 31423938 Cca01g00595 01 7523298 7527958 ECH
Cca07g01717 07 43208602 43211664 Cca01g00595 01 7523298 7527958 ECH
Cca01g01995 01 46624022 46628284 Cca01g00595 01 7523298 7527958 ECH
Cca01g00595 01 7523298 7527958 Cca05g01339 05 31419607 31423938 PCT